PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10004441m

Common Name

CICLE_v10004441mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

CPP

Protein Properties

Length: 717aa MW: 78864.8 Da PI: 6.7372

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10004441m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	51	2.9e-16	420	458	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C+C+dC+Nk Ciclev10004441m 420 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKP 458 689**********************************96 PP
2	TCR	50.9	3.1e-16	505	544	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN+ Ciclev10004441m 505 RHKRGCNCKKSSCLKKYCECYQGGVGCSINCRCEGCKNTF 544 589***********************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	1.5E-18	419	460	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	37.451	420	545	IPR005172	CRC domain
Pfam	PF03638	9.7E-12	422	457	IPR005172	CRC domain
SMART	SM01114	8.7E-18	505	546	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	9.7E-12	507	543	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 717 aa Download sequence Send to blast
MDTPKKATQM ATPLSKFEDS PVFNYINSLS PIKPVKSLPV TQTFNSLNFS SPPSIFTSPH 60 ISAHKETRFL RRNNCLGLSK PEFSSENGNK ICRNDGVAND ASQLYDNSAE LQENFDPRVS 120 MEEVSVEASN DSKFAIELPQ ALKYDCGSPG CDSNPCNIES NCMTEMASTS VSVVQFVQEA 180 SENGASEADV RLQRTCQMEQ KNEVTGCEWE SLISDAADLL IFNLPNDSED FKGLMQKSLD 240 SGGRYASVTP RYINGEPIME MIDPPISNLH RGMLRRCLDF ELVTRRKNAD GSSNYGSSVI 300 LHSDEKFASE DKQLVPLKPG SDSPRCMVPG IGLHLNALAI TPQENKNIGI ESLSSVRQIN 360 PHHEPLTSAS TERDIVAVEN GVLLAEDASQ TSAYLAEEEY NQNSPKKKRR RMENAGENES 420 CKRCNCKKSK CLKLYCECFA AGVYCIEPCS CQDCFNKPIH EDTVLATRKQ IESRNPLAFA 480 PKVIRSSDPL PEVGEDTSKT PASARHKRGC NCKKSSCLKK YCECYQGGVG CSINCRCEGC 540 KNTFGRKDGS SSTDPEAEPE DEEMEMCEKS GVDKRFQKTE FLSNEEQNPG SALPTTPLRL 600 SRPLVQLPFS TKCKPPRSLL SIGSSSGFFT GHNYGKPNIL RSQPKFEKSL QTAPEDEMPE 660 ILRGNCTPCS GIKTSSPNSK RVSPPHTILG SSPSRRSGRK LILQSIPSFP SLTPKH*

Sequence ? help Back to Top

Protein Sequence Length: 717 aa Download sequence Send to blast

MDTPKKATQM ATPLSKFEDS PVFNYINSLS PIKPVKSLPV TQTFNSLNFS SPPSIFTSPH  60
ISAHKETRFL RRNNCLGLSK PEFSSENGNK ICRNDGVAND ASQLYDNSAE LQENFDPRVS  120
MEEVSVEASN DSKFAIELPQ ALKYDCGSPG CDSNPCNIES NCMTEMASTS VSVVQFVQEA  180
SENGASEADV RLQRTCQMEQ KNEVTGCEWE SLISDAADLL IFNLPNDSED FKGLMQKSLD  240
SGGRYASVTP RYINGEPIME MIDPPISNLH RGMLRRCLDF ELVTRRKNAD GSSNYGSSVI  300
LHSDEKFASE DKQLVPLKPG SDSPRCMVPG IGLHLNALAI TPQENKNIGI ESLSSVRQIN  360
PHHEPLTSAS TERDIVAVEN GVLLAEDASQ TSAYLAEEEY NQNSPKKKRR RMENAGENES  420
CKRCNCKKSK CLKLYCECFA AGVYCIEPCS CQDCFNKPIH EDTVLATRKQ IESRNPLAFA  480
PKVIRSSDPL PEVGEDTSKT PASARHKRGC NCKKSSCLKK YCECYQGGVG CSINCRCEGC  540
KNTFGRKDGS SSTDPEAEPE DEEMEMCEKS GVDKRFQKTE FLSNEEQNPG SALPTTPLRL  600
SRPLVQLPFS TKCKPPRSLL SIGSSSGFFT GHNYGKPNIL RSQPKFEKSL QTAPEDEMPE  660
ILRGNCTPCS GIKTSSPNSK RVSPPHTILG SSPSRRSGRK LILQSIPSFP SLTPKH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	5e-17	424	542	14	120	Protein lin-54 homolog
5fd3_B	5e-17	424	542	14	120	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	405	410	KKKRRR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed at the late stage of pollen development in tricellular and mature pollen. {ECO:0000269\|PubMed:18057042}.
Uniprot	TISSUE SPECIFICITY: Ubiquitous but expressed mostly in all the aerial organs with highest expression in flowers. {ECO:0000269\|PubMed:10769245, ECO:0000269\|PubMed:18057042}.

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00433	DAP	Transfer from AT4G14770	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024046057.1	0.0	protein tesmin/TSO1-like CXC 2
Swissprot	F4JIF5	1e-179	TCX2_ARATH; Protein tesmin/TSO1-like CXC 2
TrEMBL	V4RZD1	0.0	V4RZD1_9ROSI; Uncharacterized protein
STRING	XP_006420002.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1467	28	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	1e-152	TESMIN/TSO1-like CXC 2

Link Out ? help Back to Top
Phytozome	Ciclev10004441m
Entrez Gene	18032193

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]