PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10004417m
Common NameCICLE_v10004417mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 738aa    MW: 81819.3 Da    PI: 5.5525
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10004417mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.6e-07124146427
                      ---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                      ++C ff++ G C  Gd+C F Hgp
  Ciclev10004417m 124 VPCIFFQK-GLCIKGDKCAFLHGP 146
                      69******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.8032958IPR000571Zinc finger, CCCH-type
SMARTSM003560.00183057IPR000571Zinc finger, CCCH-type
PfamPF156631.1E-113084No hitNo description
PROSITE profilePS5010310.6156086IPR000571Zinc finger, CCCH-type
SMARTSM003560.0556285IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-4120146IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.249120147IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-6121145IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4124146IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-5124146IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 738 aa     Download sequence    Send to blast
MVVAAAAQQQ HQQQQQVSTA SATAEEEALK RNTDCVYFLA SPLTCKKGSE CEYRHSEYAR  60
VNPRDCYFWL NGNCLNPKCG FRHPPLDGLI GTQMAVSTGS YFPSSHSATM PAAHASNNSG  120
KQAVPCIFFQ KGLCIKGDKC AFLHGPNTAV NKAPQPTAAA PANEPPTLKK ASGVLQKCTQ  180
EQKVPPANVP KAVVVRPEAN KHTHKAETSF PRNAAGNERN APPPSGTDDE FPRYKATNVP  240
PVINGNSLIC SNRLHQAHAL DDQSFQHGKD ADEFLRESSP GFDVLVDDEL RDSDYYHDED  300
QYGRTRGHEG RDLNSVNEYD IGRSVDYTSL TEMGRETFRD PREYDIGSYD HISMQGQYAW  360
EQHMAASDRV LVGDSSNQER RSYSKSETHN QINESDLRYR LSKHRRANGL RSVVSPDYAP  420
DNQLEEQSHR ISTRRDSRHL ASQESSLSSR LHGRIKPPRR SLVSGSDLRS ERDLERGRNW  480
GSVSPGRPQT SHQGRLRDRI KGTLEDDYSG GRNFRGPRMM RREMMDDRDA DFAGPKSLSE  540
LKGKKNAESK EQQSLRKRKS LEDHRQPEGG LSFDGPMPLS EILKRKRGAG GATSASTEKS  600
SANMEVENQK ESQGSLVGSS NNTAAQSAVS TVSKEVSNYK EAGAVKETEG KNEATHDKSS  660
QLPNASEVEA EDGMIAEEGI EDHDLEADDL RDGEYEYEQG DEGDYNYEEG ENAEGEEEYL  720
EDEDGDDFAK KIGVMFS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.207980.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006420674.10.0zinc finger CCCH domain-containing protein 17
TrEMBLV4U3W60.0V4U3W6_9ROSI; Uncharacterized protein
STRINGXP_006420674.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM89681215