PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10004306m
Common NameCICLE_v10004227mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family SBP
Protein Properties Length: 846aa    MW: 93974.9 Da    PI: 7.8405
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10004306mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP47.74.1e-152334778
                     SSEEETTT--SS--S-STTTT-------S--- CS
              SBP 47 srfhelsefDeekrsCrrrLakhnerrrkkqa 78
                     +rfh l+efDe+krsCrrrLa+hn+rrrk+++
  Ciclev10004306m  2 GRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHP 33
                     79***************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114115.05131IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.101.8E-4218IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.51E-12236IPR004333Transcription factor, SBP-box
PfamPF031105.8E-8230IPR004333Transcription factor, SBP-box
SuperFamilySSF484032.35E-7611725IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.3E-6613726IPR020683Ankyrin repeat-containing domain
CDDcd002044.00E-8614725No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 846 aa     Download sequence    Send to blast
MGRFHVLQEF DEGKRSCRRR LAGHNKRRRK THPDNVVNGG SLNDERSSSY LLISLLRILS  60
NMHSNNSDQT KDQDLLSHLF RNLAGVVGTS NVRNLSGLLQ GSQGLLNAGP SNGNVEKVPD  120
LVSTGPEPSR PSTSACMTDN RIGFSEPMRS VGQCGTVPAS DLLQKKISTN DAHSGRVQPL  180
SASQSIEMFP SRSSFSAKAN EPEATFGRSK MSNIDLNNVY DDSQERVENL ELSHAPVNPC  240
PVSLYSPLWL HPGSNKSSPP QASANSDSTS SQSQSSSSGE AQSRTDRIVF KLFGKDPNDF  300
PLVLRRQILD WLSHSPTDIE SYIRPGCIVL TIYLRLGKPT WEELCCDLGS SLRRLLEGSD  360
DSFWRTGWLY ARVQHSVAFI YNGQVVLDTP LLLKSHKSCR ISSIKPIAVP VSERVKFVVK  420
GFNLSRSTTR LLCAIEGSYL VQETCYDLMG GADTVNENDE LQCLSFPCSI PNVFGRGFIE  480
VEDHGLSSSF VPFIVAEQEV CSEICMLESA IEAAEISDDF QKIAEKTEVK NQALDFLHEM  540
GWLLHRSHMK FRLGHLHPNF YFFPFKRFKW LLEFSMEHDW CAVVKKLLGI LFDGTVDTGD  600
HTSSELAILE MGLLHKAVRR NCRPMVELLL NYAPDNVLDK PGSRQKQLVD RAGGGFIFKP  660
NVIGPAGLTP LHVAACRDDA ENVLDALTDD PGSVGIEAWK SAQDSTGLTP NDYASLRAHH  720
SYIHLVQRKI NKKSSESGRV ILDIPGSIVD WDSKQKPSNG NKSSRVLSLQ TEKIMTKVTQ  780
QQCRLCEQKV AYRNMRSSLV YRPAMLSMVA IAAVCVCVAL LFKSSPEVLY IFRPFRWELL  840
KYGSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12531KRRRKTH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5674034e-60AJ567403.1 Citrus reticulata microsatellite DNA, clone Ci02B07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024046286.10.0squamosa promoter-binding-like protein 1 isoform X1
TrEMBLV4RF500.0V4RF50_9ROSI; Uncharacterized protein
STRINGXP_006419255.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1