PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10004273m
Common NameCICLE_v10004273mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family CAMTA
Protein Properties Length: 894aa    MW: 100807 Da    PI: 7.6323
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10004273mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1163.34.3e-51251422118
             CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 
                      ++e k+rwl+++ei+aiL n + +++ +++ + pksg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+ ptf
  Ciclev10004273m  25 MEEaKTRWLRPNEIHAILCNSKYFSINAKPVNLPKSGTVVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDSPTF 118
                      55669***************************************************************************************** PP

             CG-1  95 qrrcywlLeeelekivlvhylevk 118
                       rrcywlL+++le+ivlvhy+e++
  Ciclev10004273m 119 VRRCYWLLDKTLENIVLVHYRETH 142
                      *********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143774.33621147IPR005559CG-1 DNA-binding domain
SMARTSM010761.0E-7424142IPR005559CG-1 DNA-binding domain
PfamPF038591.2E-4527140IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.108.8E-4340431IPR013783Immunoglobulin-like fold
PfamPF018331.0E-4342428IPR002909IPT domain
SuperFamilySSF812962.1E-14343429IPR014756Immunoglobulin E-set
CDDcd002042.49E-13527637No hitNo description
Gene3DG3DSA:1.25.40.202.6E-14528640IPR020683Ankyrin repeat-containing domain
PfamPF127962.0E-6528607IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.42E-15536641IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.69545610IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.953578610IPR002110Ankyrin repeat
SMARTSM002489.6E-6578607IPR002110Ankyrin repeat
SMARTSM00015340688710IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.86E-7689792IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500966.797726752IPR000048IQ motif, EF-hand binding site
SMARTSM0001522741763IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.803742771IPR000048IQ motif, EF-hand binding site
PfamPF006120.23744762IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0011764786IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.487765789IPR000048IQ motif, EF-hand binding site
PfamPF006122.0E-4766785IPR000048IQ motif, EF-hand binding site
SMARTSM0001513846868IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.968848876IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 894 aa     Download sequence    Send to blast
MAELLVGSEI HGFHTLKDLD VANMMEEAKT RWLRPNEIHA ILCNSKYFSI NAKPVNLPKS  60
GTVVLFDRKM LRNFRKDGHN WKKKKDGKTV KEAHEHLKVG NEERIHVYYA HGEDSPTFVR  120
RCYWLLDKTL ENIVLVHYRE THEGTPATPP NSHSSSISDQ SAPLLLSEEF NSGAGHAYSA  180
GGKELQAPNE SLTVQNHEMR LHELNTLEWD DLVVTNDSND STEPRGDKFS HFDQQNHTAI  240
KGAASNPIDR SNNTQFNNLD GVYSELMGTQ SSVSSQRNEF GEVCTGDSLD ILAGDGLQSQ  300
DSFGKWMNYI MTDSPGSVDD PVLEPSISSG HHQFTVPEHL FSITDVSPAW AFSNEKTKIL  360
VTGFFHKDCL HLSKSNMFCV CGEVRVPAEF VQAGVYRCFL PPHSPGLFLL YMSLDGHKPI  420
SQVLNFEYRS PQLHAPVASS EDKSKWEEFQ VQMRLAHLLF SSFKGLKILS SKVPPNSLKE  480
AKKFASKSTC ISNSWAYLFK SIGDKRTSLP EAKDSFFELT LKSKLKEWLL ERVVEGSKTT  540
EYDVHGQGVI HLCAMLGYTW AILLFSWSGL SLDFRDKYGW TALHWAAYYG REKMVVGLLS  600
AGAKPNLVTD PTSENPGGLN AADVASKKGF DGLAAFLSEQ ALVAQFNDMT LAGNISGSLQ  660
TGSTITVDTQ NLTEDEVYLK DTLSAYRTAA EAAARIQAAF REHSLKVQTK AIRFSSPEEE  720
AQNIIAALKI QHAFRNFEVR KKMAAAARIQ HRFRSWKVRK EFLNMRRQAI KIQAAFRGFQ  780
VRKQYGKILW SVGVLEKAIL RWRLKRKGFR GLQVDRVEVE AVSDPNHEGD AEEDFYRASR  840
KQAEERVERS VVRVQSMFRS KKAQEEYRRM KLAHDQAKLE YEGLLDPDME MAD*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488865.10.0calmodulin-binding transcription activator 5
RefseqXP_024036941.10.0calmodulin-binding transcription activator 5
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLV4S7090.0V4S709_9ROSI; Uncharacterized protein
STRINGXP_006419421.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40212758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Ye J, et al.
    Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes.
    Plant Cell, 2009. 21(12): p. 3868-84
    [PMID:20023198]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  3. Lan Y,Liu X,Fu Y,Huang S
    Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips.
    PLoS Genet., 2018. 14(11): p. e1007789
    [PMID:30418966]