PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10004227m
Common NameCICLE_v10004227mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family SBP
Protein Properties Length: 1039aa    MW: 115261 Da    PI: 8.0442
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10004227mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.27.7e-41149226178
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      +Cqve+C+adls+ak+yhrrhkvC++hska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  Ciclev10004227m 149 VCQVEDCRADLSNAKDYHRRHKVCDMHSKATKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHP 226
                      6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.3E-32144211IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.129147224IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.24E-38148229IPR004333Transcription factor, SBP-box
PfamPF031104.5E-29150223IPR004333Transcription factor, SBP-box
SuperFamilySSF484033.18E-7804918IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.0E-6806919IPR020683Ankyrin repeat-containing domain
CDDcd002045.17E-8807918No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1039 aa     Download sequence    Send to blast
MEAKFGGKVQ NFYGPVVSDL KAVGKKTLEW DLNDWKWDGD LFTASPLNSA PSDCRNRQLF  60
PVGPEIPANG AQSNCSSSSS EDNNVGNEKG KREMEKRRRV VVVEDDELIN DQGGLLNLKL  120
GGRVYPVTDG DAKSGKKTKI VGTTANRAVC QVEDCRADLS NAKDYHRRHK VCDMHSKATK  180
ALVGNVMQRF CQQCSRFHVL QEFDEGKRSC RRRLAGHNKR RRKTHPDNVV NGGSLNDERS  240
SSYLLISLLR ILSNMHSNNS DQTKDQDLLS HLFRNLAGVV GTSNVRNLSG LLQGSQGLLN  300
AGPSNGNVEK VPDLVSTGPE PSRPSTSACM TDNRIGFSEP MRSVGQCGTV PASDLLQKKI  360
STNDAHSGRV QPLSASQSIE MFPSRSSFSA KANEPEATFG RSKMSNIDLN NVYDDSQERV  420
ENLELSHAPV NPCPVSLYSP LWLHPGSNKS SPPQASANSD STSSQSQSSS SGEAQSRTDR  480
IVFKLFGKDP NDFPLVLRRQ ILDWLSHSPT DIESYIRPGC IVLTIYLRLG KPTWEELCCD  540
LGSSLRRLLE GSDDSFWRTG WLYARVQHSV AFIYNGQVVL DTPLLLKSHK SCRISSIKPI  600
AVPVSERVKF VVKGFNLSRS TTRLLCAIEG SYLVQETCYD LMGGADTVNE NDELQCLSFP  660
CSIPNVFGRG FIEVEDHGLS SSFVPFIVAE QEVCSEICML ESAIEAAEIS DDFQKIAEKT  720
EVKNQALDFL HEMGWLLHRS HMKFRLGHLH PNFYFFPFKR FKWLLEFSME HDWCAVVKKL  780
LGILFDGTVD TGDHTSSELA ILEMGLLHKA VRRNCRPMVE LLLNYAPDNV LDKPGSRQKQ  840
LVDRAGGGFI FKPNVIGPAG LTPLHVAACR DDAENVLDAL TDDPGSVGIE AWKSAQDSTG  900
LTPNDYASLR AHHSYIHLVQ RKINKKSSES GRVILDIPGS IVDWDSKQKP SNGNKSSRVL  960
SLQTEKIMTK VTQQQCRLCE QKVAYRNMRS SLVYRPAMLS MVAIAAVCVC VALLFKSSPE  1020
VLYIFRPFRW ELLKYGSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A9e-301492231084squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19599KRRRV
2218224KRRRKTH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5674035e-60AJ567403.1 Citrus reticulata microsatellite DNA, clone Ci02B07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024046286.10.0squamosa promoter-binding-like protein 1 isoform X1
TrEMBLV4S1A60.0V4S1A6_9ROSI; Uncharacterized protein
STRINGXP_006419255.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30302764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60030.10.0squamosa promoter-binding protein-like 12