PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10004209m

Common Name

CICLE_v10004186mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB_related

Protein Properties

Length: 1104aa MW: 123188 Da PI: 8.8106

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10004209m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.5	2.3e-11	46	81	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++eE e++++a +++G++ Wk+Ia+ + +Rt++++ Ciclev10004209m 46 QWSKEELERFYEAYRKYGKD-WKKIAAAVR-NRTAEMV 81 6***************99.*****.*9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	10.109	42	95	IPR017884	SANT domain
SuperFamily	SSF46689	7.18E-11	43	89	IPR009057	Homeodomain-like
SMART	SM00717	2.3E-6	43	91	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-7	46	81	IPR009057	Homeodomain-like
Pfam	PF00249	9.1E-10	46	81	IPR001005	SANT/Myb domain
CDD	cd00167	5.31E-8	47	81	No hit	No description
SMART	SM01135	1.2E-51	622	723	IPR033471	DIRP domain
Pfam	PF06584	4.7E-32	622	722	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1104 aa Download sequence Send to blast
MAPTRRSKSV NKRVAYTSEV ASKKKAENAD RSGKRKRKLS DMLGPQWSKE ELERFYEAYR 60 KYGKDWKKIA AAVRNRTAEM VEALFTMNRA YLSLPEGTAS VVGLIAMMTD HYGILAGSDG 120 EQESDEATGS SQKSQKCAGG KFQNPPPKGS DGPSPDLLNF QSAAPNYGCL SLLKKRRSGS 180 RPRAVAKRTP RVPVSYSYDK DNTEKYISPI KQGLKPRLGS IDDDVTHEIA LALTEASQRG 240 GSLLVSQTPK RKRGKPSPVQ KGSRTCDVSE MNSSKPHGSE MDEDGRELSL GSTDADNGYY 300 SRDKIYLMDA ETADTIEIQQ KGKRYHSKKL KQEESVSNHL DDIKEACSGT EEGQDMVVTK 360 GKFAMEIADE KNSTSYSKGS KKRSKKVLFK RDESSEFDAL QTLADLSLMM PETTADTELS 420 LQLKEEKPEA VNESKLKGNR SSTGVKDTAI KTSKLGKDCT DDVSVIPESE EGNHLTNSGN 480 RTKRQKFLPI KLRMDATEEL KKFISKGKRS LSASQSKHGK LVKPPEHTSS TDHEKEGNNS 540 ASSTALVRTA NQVNLPTKVR SRRKMNRRKL LIERDKMSSE DILNDHNRTN SSFFDRAIKQ 600 KEQLSNCLSW YQVRVWCVCE WFYSTIDYPW FAKREFVEYL DHVGLSHVPR LTRVEWGVIR 660 SSLGRPRRFS EQFLKEEKEK LNQYRESVRN HYSELRSGTK EGLPTDLARP LYVGQRIIAV 720 HPRTREICDG SVLTVEHSRY RVQFDKRELG IEFVQDIDCL PLNPLENMPA SLTRPNVAFG 780 KFMDNFTELQ MNGQPRERDI EGYMKFTPCE NLETAYAPSH ISPSTNYPIN NLLQQHKGVS 840 YTDSEVHVGS TGQAKEEDVL ALSHLRHALD KKVASALFCL RQRNTYQGNT CLTGLKPMSG 900 LGNLGGGLPN SFDHSAYQTP ESGPHVVEVV ESSRSKAQKM VDVAVQALSS LEKEGNGIER 960 IEEAMDYVNN KLAGNDSGMP SIRSSTSADL VHSSRNSQDQ QLETHTTNLL ANSRAPDSTL 1020 NNSSDENSAH IPLELIAHCV AALFMIQRCT ERDFPPADVA LVLDSAVTSL QPCCSQNLPV 1080 YAEIQKCMGI IRNQILALIP TST*

Sequence ? help Back to Top

Protein Sequence Length: 1104 aa Download sequence Send to blast

MAPTRRSKSV NKRVAYTSEV ASKKKAENAD RSGKRKRKLS DMLGPQWSKE ELERFYEAYR  60
KYGKDWKKIA AAVRNRTAEM VEALFTMNRA YLSLPEGTAS VVGLIAMMTD HYGILAGSDG  120
EQESDEATGS SQKSQKCAGG KFQNPPPKGS DGPSPDLLNF QSAAPNYGCL SLLKKRRSGS  180
RPRAVAKRTP RVPVSYSYDK DNTEKYISPI KQGLKPRLGS IDDDVTHEIA LALTEASQRG  240
GSLLVSQTPK RKRGKPSPVQ KGSRTCDVSE MNSSKPHGSE MDEDGRELSL GSTDADNGYY  300
SRDKIYLMDA ETADTIEIQQ KGKRYHSKKL KQEESVSNHL DDIKEACSGT EEGQDMVVTK  360
GKFAMEIADE KNSTSYSKGS KKRSKKVLFK RDESSEFDAL QTLADLSLMM PETTADTELS  420
LQLKEEKPEA VNESKLKGNR SSTGVKDTAI KTSKLGKDCT DDVSVIPESE EGNHLTNSGN  480
RTKRQKFLPI KLRMDATEEL KKFISKGKRS LSASQSKHGK LVKPPEHTSS TDHEKEGNNS  540
ASSTALVRTA NQVNLPTKVR SRRKMNRRKL LIERDKMSSE DILNDHNRTN SSFFDRAIKQ  600
KEQLSNCLSW YQVRVWCVCE WFYSTIDYPW FAKREFVEYL DHVGLSHVPR LTRVEWGVIR  660
SSLGRPRRFS EQFLKEEKEK LNQYRESVRN HYSELRSGTK EGLPTDLARP LYVGQRIIAV  720
HPRTREICDG SVLTVEHSRY RVQFDKRELG IEFVQDIDCL PLNPLENMPA SLTRPNVAFG  780
KFMDNFTELQ MNGQPRERDI EGYMKFTPCE NLETAYAPSH ISPSTNYPIN NLLQQHKGVS  840
YTDSEVHVGS TGQAKEEDVL ALSHLRHALD KKVASALFCL RQRNTYQGNT CLTGLKPMSG  900
LGNLGGGLPN SFDHSAYQTP ESGPHVVEVV ESSRSKAQKM VDVAVQALSS LEKEGNGIER  960
IEEAMDYVNN KLAGNDSGMP SIRSSTSADL VHSSRNSQDQ QLETHTTNLL ANSRAPDSTL  1020
NNSSDENSAH IPLELIAHCV AALFMIQRCT ERDFPPADVA LVLDSAVTSL QPCCSQNLPV  1080
YAEIQKCMGI IRNQILALIP TST*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	22	37	KKKAENADRSGKRKRK
2	248	255	PKRKRGKP

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed ubiquitously in vegetative and reproductive tissues. {ECO:0000269\|PubMed:15246533}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006419625.1	0.0	protein ALWAYS EARLY 3 isoform X3
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	V4S2B4	0.0	V4S2B4_9ROSI; Uncharacterized protein
STRING	XP_006419626.1	0.0	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	Ciclev10004209m
Entrez Gene	18032538

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]