PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10003746m
Common NameCICLE_v10003746mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LBD
Protein Properties Length: 188aa    MW: 20088.7 Da    PI: 8.9438
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10003746mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.55.8e-302103197
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C++ C+l+ ++     p++q +++ +++k+FG+s +l++++a+p+++r+++++sl++eA+ r+ +Pv Gavg+++++++++++
  Ciclev10003746m   2 SCNGCRVLRKGCSETCILRSCLqwidtPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCR 95 
                      6********************************************************************************************* PP

           DUF260  90 lkaelall 97 
                      +++e++l 
  Ciclev10003746m  96 AAVETVLS 103
                      **998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.3341107IPR004883Lateral organ boundaries, LOB
PfamPF031954.5E-252101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCILR SCLQWIDTPE AQGNATLFLA KFFGRSDLLS FIAAVPQHQR  60
PALFQSLLFE ACGRTVNPVD GAVGLLSSGN WHVCRAAVET VLSGGTLIRP TAPAATTTRT  120
GPKPNNFDKD EGSPPAQSNP SSDGVMTGKR GRGRSPAMSF YSDTTDFQSS KRGGDHHQDK  180
KLLNLFV*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006433624.11e-137LOB domain-containing protein 39
RefseqXP_006472287.11e-137LOB domain-containing protein 39
SwissprotQ9SZE86e-59LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A067GP861e-136A0A067GP86_CITSI; Uncharacterized protein
TrEMBLA0A2H5P6J41e-136A0A2H5P6J4_CITUN; Uncharacterized protein
TrEMBLV4V4L51e-136V4V4L5_9ROSI; Uncharacterized protein
STRINGXP_006472287.11e-137(Citrus sinensis)
STRINGXP_006433624.11e-137(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.16e-61LOB domain-containing protein 39