PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10003726m | ||||||||
Common Name | CICLE_v10003726mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB_related | ||||||||
Protein Properties | Length: 90aa MW: 10141.3 Da PI: 5.1489 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.6 | 3.4e-09 | 7 | 52 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 WT+ +l+ +a + + ++ +W+ ar +g g+t +++k ++ + Ciclev10003726m 7 TWTAKQNKLFENALAIYDKDtpdRWHNLARAVG-GKTVEEVKRHYEM 52 7********************************.***********76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 11.27 | 3 | 58 | IPR017884 | SANT domain |
SMART | SM00717 | 2.5E-7 | 4 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-5 | 6 | 60 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.0E-6 | 7 | 53 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.91E-7 | 7 | 53 | No hit | No description |
SuperFamily | SSF46689 | 1.87E-12 | 8 | 61 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 90 aa Download sequence Send to blast |
MASGSSTWTA KQNKLFENAL AIYDKDTPDR WHNLARAVGG KTVEEVKRHY EMLAEDVSRI 60 EAGEIPLPDY KKIGGTNKAP SYINMDNEEQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-30 | 8 | 78 | 11 | 81 | RADIALIS |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006434998.2 | 1e-62 | protein RADIALIS-like 3 isoform X1 | ||||
Refseq | XP_024038926.1 | 1e-62 | protein RADIALIS-like 3 isoform X2 | ||||
Swissprot | Q1A173 | 8e-34 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | V4SKI0 | 5e-61 | V4SKI0_9ROSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006434998.1 | 9e-62 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM221 | 28 | 198 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 3e-36 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10003726m |
Entrez Gene | 18043079 |