PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10003620m | ||||||||
Common Name | CICLE_v10003620mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB_related | ||||||||
Protein Properties | Length: 93aa MW: 10577.8 Da PI: 9.1212 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.4 | 1.9e-09 | 16 | 60 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT+e +++ +a + + ++ +W +ar +g g+++ ++k ++ Ciclev10003620m 16 TWTPEQNKKFERALAVYDKDtpdRWQNVARAVGGGKSPDDVKRHY 60 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.097 | 9 | 64 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-4 | 10 | 64 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-8 | 13 | 66 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.36E-13 | 15 | 72 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.7E-7 | 16 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.80E-6 | 16 | 64 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 93 aa Download sequence Send to blast |
MASSSIASSR RVDQSTWTPE QNKKFERALA VYDKDTPDRW QNVARAVGGG KSPDDVKRHY 60 DRLVEDLIFI ESAQFPLPNY KNTGKQLHWH SC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-28 | 8 | 87 | 2 | 80 | RADIALIS |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006435008.1 | 9e-65 | protein RADIALIS-like 6 | ||||
Swissprot | Q1A173 | 8e-31 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A2H5NSE3 | 2e-63 | A0A2H5NSE3_CITUN; Uncharacterized protein | ||||
TrEMBL | V4SKI7 | 2e-63 | V4SKI7_9ROSI; Uncharacterized protein | ||||
STRING | XP_006435008.1 | 4e-64 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM221 | 28 | 198 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 3e-33 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10003620m |
Entrez Gene | 18042982 |