PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10003558m | ||||||||
Common Name | CICLE_v10003558mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NF-YB | ||||||||
Protein Properties | Length: 215aa MW: 24113.6 Da PI: 6.1559 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 179.5 | 3e-56 | 38 | 133 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 +eqdrflPianv+rimkkv+P+n+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd++wa++tlGfedyv+plk+yl+kyre+eg Ciclev10003558m 38 KEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKLYLSKYREIEG 131 89*******************************************************************************************9 PP NF-YB 96 ek 97 ek Ciclev10003558m 132 EK 133 96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.2E-54 | 31 | 159 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 7.66E-41 | 40 | 154 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.1E-28 | 43 | 107 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 2.4E-19 | 71 | 89 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 74 | 90 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 2.4E-19 | 90 | 108 | No hit | No description |
PRINTS | PR00615 | 2.4E-19 | 109 | 127 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MEDDSHGNGP NGPDGGSPES PCVKSSGSNS NNNNHNNKEQ DRFLPIANVG RIMKKVIPGN 60 GKISKDAKET VQECVSEFIS FVTGEASDKC QREKRKTING DDIIWAITTL GFEDYVAPLK 120 LYLSKYREIE GEKLNIPKQQ RSEQRVQQQQ QQQQSHEHEQ QLPYSSVYSS TNLMSQSPFM 180 ATDHHHQSFP LPFSPNSIQK QLQPQDQIDS VGNW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 2e-45 | 38 | 128 | 2 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 2e-45 | 38 | 128 | 2 | 92 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers and green siliques. {ECO:0000269|PubMed:11250072}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006432153.1 | 1e-159 | nuclear transcription factor Y subunit B-7 | ||||
Refseq | XP_006465083.1 | 1e-159 | nuclear transcription factor Y subunit B-7 | ||||
Swissprot | Q9SIT9 | 9e-71 | NFYB7_ARATH; Nuclear transcription factor Y subunit B-7 | ||||
TrEMBL | V4SCS6 | 1e-158 | V4SCS6_9ROSI; Uncharacterized protein | ||||
STRING | XP_006465083.1 | 1e-159 | (Citrus sinensis) | ||||
STRING | XP_006432153.1 | 1e-159 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM255 | 28 | 229 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G13570.1 | 8e-70 | nuclear factor Y, subunit B7 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10003558m |
Entrez Gene | 18040900 |
Publications ? help Back to Top | |||
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