PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10003479m
Common NameCICLE_v10003479mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 278aa    MW: 30201.3 Da    PI: 8.9943
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10003479mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH253.2e-08113138227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ktelCr   + G C++G +C+FaHg+
  Ciclev10003479m 113 KTELCRSREEVGMCRFGTKCQFAHGK 138
                      9***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.109.6E-14110142IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.155111139IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-5111138IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.61E-8112143IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-4113138IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MQRVVESVYK SKMGKQKSPN GNVSPLMKYL SSSSTSSSSL SSRSALSMGP FSPVPIMSKS  60
NSSSSSCHLS AVDEEDVYVM DGLPIMRYSP SPSPSPSPSP SPSSSSSSSS SSKTELCRSR  120
EEVGMCRFGT KCQFAHGKEE LRSTLFPTTK NKSEVMTDSA LVLTIQMEDH SMKACVCESP  180
VTPVTFKPRL TNTAIKPEHT RKTTALVNKH VQSRATSTSS RDNWSPQDDG IEVTLPCHPS  240
KTPPRVKVDE YIDTVLCCPT TAARRRLPVF TKICPEY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024040092.11e-155mRNA decay activator protein ZFP36
TrEMBLV4SDN60.0V4SDN6_9ROSI; Uncharacterized protein
STRINGXP_006432463.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15770815
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.13e-06C3H family protein