PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10003358m

Common Name

CICLE_v10003358mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 432aa MW: 50286.8 Da PI: 7.3124

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10003358m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	26.7	1.8e-08	56	97	50	90
FAR1 50 kerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 + ++raetr+gC a+l vk+++ ++++ v+++++ HnH+l+ Ciclev10003358m 56 LTVKPRAETRIGCGAQLCVKLDRkKNNFFVYHFVESHNHSLV 97 56789**************99999***********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-5	57	97	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
MAATDVVLEN FSELYWKPKY GMDFDSDESV YDFYNAYGSK VGFSIRKETF DKQDHLTVKP 60 RAETRIGCGA QLCVKLDRKK NNFFVYHFVE SHNHSLVMEE CTHMLSSQRR ISSSQAMEVD 120 LADGFGISLK STYELMHVNG VFKGTSTMKS VLSVFMDSIE DENEFLVAWD NVLDEYDVHG 180 NIWLKRIFEL RHKWVYAYVS QAWSAGMKST QLSESFNAIL KDYLKSNLNM PQFFMHFERM 240 VNDKWHKKLE AEYELCYKLV NMKMSVKMLA HAREIYTKVI FQEFQDQFEK SINLFVKKDS 300 RDGEYLVCTV GMDDFEKGCV KIENDGTLAC SYKRFEMRGV LCSHIINVLR DVIDVKEIPI 360 GYILKGWTKQ ARAECIKDMY RREIQADPKL EQTCRYRSLC SIFTKISSWA SESKKAYKLA 420 NAHAMDLARL I*

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

MAATDVVLEN FSELYWKPKY GMDFDSDESV YDFYNAYGSK VGFSIRKETF DKQDHLTVKP  60
RAETRIGCGA QLCVKLDRKK NNFFVYHFVE SHNHSLVMEE CTHMLSSQRR ISSSQAMEVD  120
LADGFGISLK STYELMHVNG VFKGTSTMKS VLSVFMDSIE DENEFLVAWD NVLDEYDVHG  180
NIWLKRIFEL RHKWVYAYVS QAWSAGMKST QLSESFNAIL KDYLKSNLNM PQFFMHFERM  240
VNDKWHKKLE AEYELCYKLV NMKMSVKMLA HAREIYTKVI FQEFQDQFEK SINLFVKKDS  300
RDGEYLVCTV GMDDFEKGCV KIENDGTLAC SYKRFEMRGV LCSHIINVLR DVIDVKEIPI  360
GYILKGWTKQ ARAECIKDMY RREIQADPKL EQTCRYRSLC SIFTKISSWA SESKKAYKLA  420
NAHAMDLARL I*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024039370.1	0.0	protein FAR1-RELATED SEQUENCE 1
TrEMBL	V4T292	0.0	V4T292_9ROSI; Uncharacterized protein
STRING	XP_006432275.1	0.0	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-29	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Ciclev10003358m
Entrez Gene	18042312