PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10003273m | ||||||||
Common Name | CICLE_v10003273mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NAC | ||||||||
Protein Properties | Length: 242aa MW: 27157.8 Da PI: 7.2469 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 74.3 | 3e-23 | 9 | 132 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLp.kkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +G+rF+Pt+eel+++ L k+++g+ l+ i+e+++y Pw++ + +++++k wy F++ +k+ +kr +r++ +g+W+ + ke++ Ciclev10003273m 9 VGVRFKPTEEELIKFCLLKRAKGQVLSP-CPIAECELYGKrSPWEIFdEGANNSDKsIWYCFTSLKKA--GKKRISRVAGKGTWHGESSAKEIV 99 7***********************9887.56****9995549****6444444333378888887665..578********************* PP NAM 94 sk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ k+ ++g kkt+ f kg+k+dW m+e+rl Ciclev10003273m 100 DSkkKNVVIGFKKTFKFR----IKGKKSDWNMDEFRL 132 985455569********7....7899*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.45E-27 | 5 | 149 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 27.933 | 7 | 149 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.9E-17 | 9 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MEARFHLGVG VRFKPTEEEL IKFCLLKRAK GQVLSPCPIA ECELYGKRSP WEIFDEGANN 60 SDKSIWYCFT SLKKAGKKRI SRVAGKGTWH GESSAKEIVD SKKKNVVIGF KKTFKFRIKG 120 KKSDWNMDEF RLADDEESNN YVLCKIKKKK PKAAEEEEVE EAASEVATTN TMNNFAAESH 180 QSCSQMFIPP SSISACDNIN GGEQCYGMEN LPNQVEIINS NGLRPPISEA TQKVTNITDD 240 DD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-14 | 2 | 150 | 10 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006432683.2 | 0.0 | NAC domain-containing protein 2 | ||||
Refseq | XP_015383719.1 | 0.0 | NAC domain-containing protein 2-like | ||||
TrEMBL | V4SE77 | 1e-179 | V4SE77_9ROSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006432683.1 | 1e-180 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13343 | 7 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63790.1 | 8e-16 | NAC domain containing protein 102 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10003273m |
Entrez Gene | 18040161 |