PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10003251m
Common NameCICLE_v10003251mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 320aa    MW: 36135.4 Da    PI: 6.1794
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10003251mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.86.1e-191562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lvd++ ++G g+W++ ++  g++R++k+c++rw +yl
  Ciclev10003251m 15 KGPWTPEEDQKLVDYIGRHGHGSWNALPKLAGLNRCGKSCRLRWTNYL 62
                     79********************************************97 PP

2Myb_DNA-binding55.41.4e-1768112147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr+++eE+ ++++++  lG++ W++Ia++++ gRt++++k++w+++
  Ciclev10003251m  68 RGRFSEEEERIIINLHSVLGNK-WSRIASHLP-GRTDNEIKNFWNTH 112
                      89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.5161062IPR017930Myb domain
SuperFamilySSF466891.22E-3112109IPR009057Homeodomain-like
SMARTSM007178.8E-151464IPR001005SANT/Myb domain
PfamPF002492.3E-171562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-241669IPR009057Homeodomain-like
CDDcd001672.72E-111762No hitNo description
PROSITE profilePS5129426.05963117IPR017930Myb domain
SMARTSM007171.4E-1667115IPR001005SANT/Myb domain
PfamPF002491.0E-1568112IPR001005SANT/Myb domain
CDDcd001671.81E-1270113No hitNo description
Gene3DG3DSA:1.10.10.601.8E-2670116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MGRSPCCDES RSLKKGPWTP EEDQKLVDYI GRHGHGSWNA LPKLAGLNRC GKSCRLRWTN  60
YLRPDIRRGR FSEEEERIII NLHSVLGNKW SRIASHLPGR TDNEIKNFWN THIRKKFLQM  120
GIDPITHKPR VDLSQFLNLP QTLYSSPFGN LSTSPFGNNN ALKLQTDATQ LARIELLQNL  180
LELMNTSAVI PNVGNYSGAL GFDNLNQPFQ NVMAQATLQN PGSSPQTTGE LEAQINSLSW  240
FEAGLEQFEG LSDHDVISNE NSSYGHNIQQ ECKLPPMVNA SCDETPSLSQ TDHHFAAYEA  300
WEKFIDDETS DSYWKKFLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-31131175108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006432792.10.0transcription factor MYB39
RefseqXP_006471607.10.0transcription factor MYB39-like
TrEMBLV4SYY10.0V4SYY1_9ROSI; Uncharacterized protein
STRINGXP_006471607.10.0(Citrus sinensis)
STRINGXP_006432792.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.24e-89myb domain protein 9