PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10003251m | ||||||||
Common Name | CICLE_v10003251mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB | ||||||||
Protein Properties | Length: 320aa MW: 36135.4 Da PI: 6.1794 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.8 | 6.1e-19 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lvd++ ++G g+W++ ++ g++R++k+c++rw +yl Ciclev10003251m 15 KGPWTPEEDQKLVDYIGRHGHGSWNALPKLAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.4 | 1.4e-17 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr+++eE+ ++++++ lG++ W++Ia++++ gRt++++k++w+++ Ciclev10003251m 68 RGRFSEEEERIIINLHSVLGNK-WSRIASHLP-GRTDNEIKNFWNTH 112 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.516 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.22E-31 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.8E-15 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-17 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-24 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.72E-11 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 26.059 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-16 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-15 | 68 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.81E-12 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-26 | 70 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MGRSPCCDES RSLKKGPWTP EEDQKLVDYI GRHGHGSWNA LPKLAGLNRC GKSCRLRWTN 60 YLRPDIRRGR FSEEEERIII NLHSVLGNKW SRIASHLPGR TDNEIKNFWN THIRKKFLQM 120 GIDPITHKPR VDLSQFLNLP QTLYSSPFGN LSTSPFGNNN ALKLQTDATQ LARIELLQNL 180 LELMNTSAVI PNVGNYSGAL GFDNLNQPFQ NVMAQATLQN PGSSPQTTGE LEAQINSLSW 240 FEAGLEQFEG LSDHDVISNE NSSYGHNIQQ ECKLPPMVNA SCDETPSLSQ TDHHFAAYEA 300 WEKFIDDETS DSYWKKFLE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-31 | 13 | 117 | 5 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006432792.1 | 0.0 | transcription factor MYB39 | ||||
Refseq | XP_006471607.1 | 0.0 | transcription factor MYB39-like | ||||
TrEMBL | V4SYY1 | 0.0 | V4SYY1_9ROSI; Uncharacterized protein | ||||
STRING | XP_006471607.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006432792.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 4e-89 | myb domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10003251m |
Entrez Gene | 18042149 |