PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10002733m | ||||||||
Common Name | CICLE_v10002733mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ERF | ||||||||
Protein Properties | Length: 163aa MW: 18275.4 Da PI: 9.916 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.9 | 5.1e-18 | 34 | 83 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykG+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g Ciclev10002733m 34 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYTTPIAAARAYDTAVFYLRG 83 69*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 2.4E-19 | 6 | 160 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
PROSITE profile | PS51032 | 21.878 | 34 | 91 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-35 | 34 | 97 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-20 | 34 | 92 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-29 | 35 | 92 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.1E-11 | 35 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-11 | 35 | 46 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.75E-26 | 35 | 93 | No hit | No description |
PRINTS | PR00367 | 2.4E-11 | 73 | 93 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001078 | Molecular Function | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MEGGGCCSTS TSTKSPEKRK PRQQRQHQQQ QEKPYKGIRM RKWGKWVAEI REPNKRSRIW 60 LGSYTTPIAA ARAYDTAVFY LRGPSARLNF PELIFQEDDL RDVSAASIRK KATEVGAKVD 120 ALQAALHAAN SESESNSNSN FNSIRLSEKP DLNKFPESSD ED* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-15 | 33 | 91 | 4 | 63 | ATERF1 |
3gcc_A | 8e-15 | 33 | 91 | 4 | 63 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.5070 | 0.0 | fruit| leaf| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at low levels in flowers, leaves, and stems, and at very low levels in roots. {ECO:0000269|PubMed:9192694}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00188 | DAP | Transfer from AT1G46768 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006434725.1 | 1e-119 | ethylene-responsive transcription factor RAP2-1 | ||||
Swissprot | Q8LC30 | 2e-52 | RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1 | ||||
Swissprot | Q9FH94 | 3e-52 | ERF10_ARATH; Ethylene-responsive transcription factor ERF010 | ||||
TrEMBL | V4T8Y2 | 1e-117 | V4T8Y2_9ROSI; Uncharacterized protein | ||||
STRING | XP_006434725.1 | 1e-118 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46768.1 | 2e-49 | related to AP2 1 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10002733m |
Entrez Gene | 18041159 |
Publications ? help Back to Top | |||
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