PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10002422m
Common NameCICLE_v10002422mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MIKC_MADS
Protein Properties Length: 220aa    MW: 25661.3 Da    PI: 9.5884
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10002422mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.94.7e-27959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krien snrqvt+skRrng++KKA+E+ vLCda+v++iif+++gk+++yss
  Ciclev10002422m  9 KRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSS 59
                     79***********************************************96 PP
2K-box86.36.2e-2969165197
            K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                      y+k+sgk+l++ak+e+l++e++++kke++++q ++Rhl+Ged++sL++keL+ Le++Le++l+ iR+k++e++ ++ ++ ++ e+e++  +  L
  Ciclev10002422m  69 YHKQSGKKLWDAKHENLYNEIDRIKKENDSMQIKLRHLKGEDVTSLNHKELMALEDALENGLTGIRDKQSEVMERMRKNGKMLEEEHNYLKYVL 162
                      899**********************************************************************999999999999999998888 PP

            K-box  95 rkk 97 
                      r++
  Ciclev10002422m 163 RQQ 165
                      887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.7E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.048161IPR002100Transcription factor, MADS-box
CDDcd002652.90E-38278No hitNo description
SuperFamilySSF554558.11E-34294IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-27323IPR002100Transcription factor, MADS-box
PfamPF003191.0E-211057IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-273859IPR002100Transcription factor, MADS-box
PfamPF014861.5E-1980160IPR002487Transcription factor, K-box
PROSITE profilePS5129714.53182176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MGRGKIEIKR IENLSNRQVT YSKRRNGLIK KAKEIAVLCD AKVSLIIFAT SGKMHDYSSA  60
PMFEILEAYH KQSGKKLWDA KHENLYNEID RIKKENDSMQ IKLRHLKGED VTSLNHKELM  120
ALEDALENGL TGIRDKQSEV MERMRKNGKM LEEEHNYLKY VLRQQEIAKQ QQQQQMALEN  180
NVREIDPNGY HQRENDGYSS HMPLAFRVQP IQPNLQERI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-18173173MEF2 CHIMERA
6byy_B5e-18173173MEF2 CHIMERA
6byy_C5e-18173173MEF2 CHIMERA
6byy_D5e-18173173MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed during flower development in stamens and petals. {ECO:0000269|PubMed:17920788, ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434290.11e-162floral homeotic protein FBP1 isoform X1
SwissprotQ0HA252e-99MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLV4T7S61e-160V4T7S6_9ROSI; Uncharacterized protein
STRINGXP_006434290.11e-161(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53002751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.11e-81MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]