PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10002348m | ||||||||
Common Name | CICLE_v10002348mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | LBD | ||||||||
Protein Properties | Length: 235aa MW: 25388 Da PI: 9.6812 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 131.5 | 3.4e-41 | 46 | 145 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+kll+++p+++r da++slv+eA+ r+rdPvyG++g i++lqqq+++l+ael Ciclev10002348m 46 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLSEVPDSQRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAEL 139 7********************************************************************************************* PP DUF260 95 allkee 100 +++++e Ciclev10002348m 140 NAMRTE 145 *99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.482 | 45 | 146 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.6E-41 | 46 | 143 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MSRDRERFDE IGKRIKRESD VLNSQMGRRQ MLNPNSSAGT LNTVTPCAAC KLLRRRCAEE 60 CPFSPYFSPH EPQKFAAVHK VFGASNVSKL LSEVPDSQRA DAANSLVFEA NLRLRDPVYG 120 CLGAISSLQQ QVQSLQAELN AMRTEIMKYK YREAATASTI ISSSNPLFSS GVVSIVGGSS 180 APSLSTSQPP PHPPPPPPPS IVISSSSSSS VSSLYTPPMR TTDYVKALLV VMLK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-46 | 46 | 161 | 11 | 126 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-46 | 46 | 161 | 11 | 126 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 4e-51 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. | |||
GenBank | HG975518 | 4e-51 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006431987.1 | 1e-170 | LOB domain-containing protein 15 isoform X2 | ||||
Refseq | XP_006468163.1 | 1e-170 | LOB domain-containing protein 15 isoform X2 | ||||
Swissprot | Q8L5T5 | 7e-78 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | V4SWR6 | 1e-169 | V4SWR6_9ROSI; Uncharacterized protein | ||||
STRING | XP_006468163.1 | 1e-170 | (Citrus sinensis) | ||||
STRING | XP_006431987.1 | 1e-170 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1927 | 27 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 2e-76 | LOB domain-containing protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10002348m |
Entrez Gene | 18041214 |
Publications ? help Back to Top | |||
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