PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10002330m
Common NameCICLE_v10002056mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GATA
Protein Properties Length: 239aa    MW: 25579.4 Da    PI: 7.0723
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10002330mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.84.8e-16201234132
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrk 32 
                      C++Cg ++  Tp++Rrgp+g+++LCnaCGl+++ 
  Ciclev10002330m 201 CTHCGISSksTPMMRRGPSGPRSLCNACGLFWAN 234
                      *****99999**********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132015.0465100IPR010399Tify domain
SMARTSM009798.2E-1265100IPR010399Tify domain
PfamPF062001.3E-136899IPR010399Tify domain
PROSITE profilePS5101712.531132174IPR010402CCT domain
PfamPF062033.2E-16132174IPR010402CCT domain
SMARTSM004011.3E-7195238IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-10195234No hitNo description
PROSITE profilePS501148.51195231IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.2E-14199235IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.88E-12200235No hitNo description
PfamPF003207.1E-14201235IPR000679Zinc finger, GATA-type
PROSITE patternPS003440201228IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MYGQSQSMNI SSQMSGGGAA ADEDDVSVAA DDHHLSYDPH SALENGIVVV EDVAHDSGYA  60
AGANELSNSS QLTLSFRGQV YVFDSVTPDK VQAVLLLLGG CELSSSPQGM EVIPHSQRGI  120
ADYPAKCTQP QRAASLDRFR QKRKERCFDK KVRYSVRQEV ALRMQRNKGQ FTSAKKSEGG  180
ALGWSNAQDP GQDDSPSETS CTHCGISSKS TPMMRRGPSG PRSLCNACGL FWANKVGV*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:10945256, ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006433799.11e-176GATA transcription factor 25 isoform X1
SwissprotQ9LRH62e-76GAT25_ARATH; GATA transcription factor 25
TrEMBLV4TBN31e-177V4TBN3_9ROSI; Uncharacterized protein
STRINGXP_006433799.11e-175(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.24e-68GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]