PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10002314m | ||||||||
Common Name | CICLE_v10002314mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | B3 | ||||||||
Protein Properties | Length: 242aa MW: 27325.7 Da PI: 10.352 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.9 | 3.2e-17 | 128 | 217 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k +++s+v+ +l lp f++++ +k ++ +tl de+g ++ + ++ + l++GWk F+ a+gL +gD +vF+l++++ f +v Ciclev10002314m 128 FIKPMLQSHVTGGFWLGLPGYFCRRNL-PK-RDEAITLIDEDGDEYPTVY--LPRKTG--LSGGWKAFAVAHGLVDGDALVFQLIRNTAF--KV 213 89*********************9994.33.5568***************..555544..*************************99999..88 PP EEE- CS B3 95 kvfr 98 ++r Ciclev10002314m 214 YIIR 217 8877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.96E-24 | 122 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.0E-21 | 122 | 219 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.02E-27 | 126 | 217 | No hit | No description |
SMART | SM01019 | 1.8E-22 | 128 | 219 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-15 | 128 | 217 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.407 | 128 | 219 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MVKAKPSYEE CRLKRVEENK KRMEALNLPM LCQALRKKPS IEPSHEKQVK PRTVKKQEDV 60 VLRRSSRVAN KPAPVYNGVT LVRVEIPRRI SSKRDLSNRV YASDEARAGA VEKAEKLEAR 120 LGPEHPTFIK PMLQSHVTGG FWLGLPGYFC RRNLPKRDEA ITLIDEDGDE YPTVYLPRKT 180 GLSGGWKAFA VAHGLVDGDA LVFQLIRNTA FKVYIIRVNG SDQMKNLLNS KYQISEPVQS 240 I* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006434799.1 | 1e-179 | B3 domain-containing protein At5g42700 isoform X1 | ||||
Swissprot | Q69V36 | 6e-70 | Y6944_ORYSJ; B3 domain-containing protein Os06g0194400 | ||||
TrEMBL | V4V7F6 | 1e-178 | V4V7F6_9ROSI; Uncharacterized protein | ||||
STRING | XP_006434799.1 | 1e-179 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3744 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 2e-72 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10002314m |
Entrez Gene | 18042191 |
Publications ? help Back to Top | |||
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