PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10002232m
Common NameCICLE_v10002182mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 256aa    MW: 29369.6 Da    PI: 4.9146
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10002232mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.13.1e-1848101356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k++++t +q+++Le+ Fe ++++  +++ +LA++lgL+ rq+ vWFqNrRa+ k
  Ciclev10002232m  48 KKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLK 101
                      56689***********************************************98 PP
2HD-ZIP_I/II124.64.4e-4047139193
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      ekkrrl+ +qvk+LE++Fe ++kLep+rKv+la+eLglqprq+avWFqnrRAR k+k+lE+dy  Lk++ydal+ ++++L++e+e+L++el+e
  Ciclev10002232m  47 EKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDHNNLQQENEALTAELRE 139
                      69***************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.43E-1840104IPR009057Homeodomain-like
PROSITE profilePS5007117.62143103IPR001356Homeobox domain
SMARTSM003898.6E-1846107IPR001356Homeobox domain
PfamPF000462.1E-1548101IPR001356Homeobox domain
CDDcd000863.94E-1548104No hitNo description
Gene3DG3DSA:1.10.10.602.8E-1950109IPR009057Homeodomain-like
PRINTSPR000319.4E-67483IPR000047Helix-turn-helix motif
PROSITE patternPS00027078101IPR017970Homeobox, conserved site
PRINTSPR000319.4E-68399IPR000047Helix-turn-helix motif
PfamPF021831.0E-14103144IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGSETFDHFH EDKTSTKRKQ IYGREFQAMM DCLEEEDCRE EASQATEKKR RLTVDQVKAL  60
EKNFEVDNKL EPDRKVKLAE ELGLQPRQIA VWFQNRRARL KSKELERDYG LLKANYDALR  120
LDHNNLQQEN EALTAELREL KAKLCQENEE TSHAVEAEAP VSEQSKNHVS SENANAQLLT  180
SPPSFSSLFT GSSSSSHPSM NWVQFSDSRT ILSNVYQQPQ LVKVEEQSLL FNPEDPCNIF  240
SVDQAPTLQW YFTGH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.201780.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Localized primarily to the hypocotyl of germinating seedlings. {ECO:0000269|PubMed:12678559}.
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment. Binds to the DNA sequence 5'-CAATNATTG-3'. {ECO:0000269|PubMed:12678559}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:12678559, ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024040105.10.0homeobox-leucine zipper protein ATHB-6 isoform X2
RefseqXP_024040106.10.0homeobox-leucine zipper protein ATHB-6 isoform X2
SwissprotP466674e-48ATHB5_ARATH; Homeobox-leucine zipper protein ATHB-5
TrEMBLV4T2320.0V4T232_9ROSI; Uncharacterized protein
STRINGXP_006433921.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65310.12e-50homeobox protein 5
Publications ? help Back to Top
  1. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  4. Stamm P, et al.
    The Transcription Factor ATHB5 Affects GA-Mediated Plasticity in Hypocotyl Cell Growth during Seed Germination.
    Plant Physiol., 2017. 173(1): p. 907-917
    [PMID:27872245]