PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10002179m

Common Name

CICLE_v10002179mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Dof

Protein Properties

Length: 266aa MW: 29824.8 Da PI: 4.7034

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10002179m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.3	1.4e-37	11	69	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +a +cprC s ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvP+Ggg+rkn++++ Ciclev10002179m 11 TAPSCPRCASPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPMGGGCRKNRRVK 69 5678****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-26	1	62	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.3E-31	13	67	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.304	13	67	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	15	51	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MEKKWKPDVE TAPSCPRCAS PNTKFCYYNN YSLSQPRYFC KGCRRYWTKG GSLRNVPMGG 60 GCRKNRRVKS SRRKSPFNND RPKASCSSDH TDDAVSTPNG GSDIDLAVVF AKFLNESSSS 120 QETDLSAAKT SNSSTPDNVV QNDDFNVHNV MGNGDLNMLG EFPQVFGQLQ EEEDRRVQDF 180 LEDDMVNAHG LQALLGDEIV DHQVALWSDQ AETETLPNFT WQRAMFQLQD FDSFPADDQL 240 KASANLISDN WTSFDLPGFE LYSRP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006434423.2	0.0	dof zinc finger protein DOF1.2
TrEMBL	A0A2H5NIU1	0.0	A0A2H5NIU1_CITUN; Uncharacterized protein
TrEMBL	V4SJ04	0.0	V4SJ04_9ROSI; Uncharacterized protein
STRING	XP_006434423.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6462	26	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21340.1	7e-44	Dof family protein

Link Out ? help Back to Top
Phytozome	Ciclev10002179m
Entrez Gene	18040706