PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10001779m
Common NameCICLE_v10001779mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family TALE
Protein Properties Length: 335aa    MW: 38003.2 Da    PI: 4.3371
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10001779mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.41.3e-092632972155
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                      + +yp+++++ +L+k++gL+++q+++WF N+R ++
  Ciclev10001779m 263 RWPYPTEDDKLKLSKETGLDQKQISNWFINQRKRH 297
                      569*****************************885 PP
2ELK35.81.8e-12217238122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ++K +L+rKYsgyL++Lk+EF+
  Ciclev10001779m 217 DIKGMLMRKYSGYLSNLKKEFL 238
                      58*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.4E-1672116IPR005540KNOX1
PfamPF037901.3E-1774114IPR005540KNOX1
SMARTSM012565.0E-24119170IPR005541KNOX2
PfamPF037915.7E-22122169IPR005541KNOX2
PROSITE profilePS5121310.336217237IPR005539ELK domain
SMARTSM011886.3E-6217238IPR005539ELK domain
PfamPF037893.4E-9217238IPR005539ELK domain
PROSITE profilePS5007112.438237300IPR001356Homeobox domain
SuperFamilySSF466891.37E-18239306IPR009057Homeodomain-like
SMARTSM003899.2E-13239304IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-26242302IPR009057Homeodomain-like
CDDcd000862.66E-12249301No hitNo description
PfamPF059201.0E-17257296IPR008422Homeobox KN domain
PROSITE patternPS000270275298IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0010094Biological Processspecification of carpel identity
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEDLYNRLDD PAAATVSYSS DDFLRVENFS LGNFTANTTT AGELYNPPCV DSMLQFNSEI  60
TAAAGSDNIS DDLIKARIAN HPRFPNLLSA YIDCQKIGVP SEVAFLLEEI CRENNTTRCS  120
SEIGADPELD EFMESYSEVL RRYKEELAKP FDEATTFLSN IELQLSNLCN GEFTRTLDYP  180
SDEAAGTSEE ELSYEEAEPL DCQDFLNASS GPADDQDIKG MLMRKYSGYL SNLKKEFLKK  240
KKKGKLPKDA KTTLMDWWNE HYRWPYPTED DKLKLSKETG LDQKQISNWF INQRKRHWKP  300
SEDMRFALLE GATLGGNYSS NDRGPMFLNT SDFN*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Highly expressed in the early globular stage embryo before 2 days after pollination (DAP), but not in the endosperm. At 3 and 4 DAP, expression is restricted to the region around or just below the center of the ventral side of the embryo, where the shoot apex subsequently arises. During the transition to the shoot apex differentiation stage, expression is divided between the upper and basal regions of the shoot area, and the notch between the first leaf primordium and epiblast, respectively. When the first leaf primordia is evident, expression is localized to the notches between the shoot apical meristem (SAM) and the first leaf primordium and the putative second leaf primordium. Expressed uniformly in the inflorescence meristem, but after the transition from inflorescence to the floral phase, located specifically in the notches between the floral meristem and glume primordia. At later stages of flower development, uniformly expressed throughout the corpus of the meristem, and in the notches between glume primordia, but less well defined than in the previous stage. {ECO:0000269|PubMed:10488233}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006433535.10.0homeobox protein knotted-1-like 1
SwissprotQ9FP295e-89KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLV4T5T40.0V4T5T4_9ROSI; Uncharacterized protein
STRINGXP_006433535.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8352785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70510.15e-75KNOTTED-like from Arabidopsis thaliana 2
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]