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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Ciclev10001778m |
| Common Name | CICLE_v10001400mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
BBR-BPC |
| Protein Properties |
Length: 336aa MW: 37281.1 Da PI: 9.9379 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Ciclev10001778m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 389.4 | 5.5e-119 | 1 | 335 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yyepa..aslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllv 87
mdd g+re r+k+ +y+ a + l +++ +q+m+++aerda+++ernla+sekkaa+aerdmaflqrd+a+aern+a++erdn++++l+++
Ciclev10001778m 1 MDDGGHREngRHKAdQYKAAqgQWLMHHQpsMKQIMTIMAERDAALQERNLAISEKKAAIAERDMAFLQRDTAIAERNNAILERDNAIASLQYR 94
9*****999*****99*9544433433331145************************************************************* PP
GAGA_bind 88 ensla...salpvgvqvlsgtksidslqqlse..pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskk 176
ensl s++p+g+q+++g+k++++ qq+ + +++++ a+ re+++ +alp++ a+ea + ++ k r +ke+k +++kk++ks +
Ciclev10001778m 95 ENSLGgnmSSCPPGCQISRGVKHMHHPQQHVHqlHHVSEAAYS-REMHTGDALPVSPGASEAAKPRRYK---R---AKEPKVLSPNKKTAKSPR 181
**9878889********************55545555565555.**********988666665555554...4...444444455555556667 PP
GAGA_bind 177 kvkkesader.............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSv 241
kvk+e++d + sk+++k + l+ln+v++Dest+P+P+CsCtG+lrqCYkWGnGGWqSaCCtt++S+
Ciclev10001778m 182 KVKRENEDLNkvvfgkpsewksvqdldggdddvnkqstaSKSDWKGQVLGLNQVTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSM 275
777777664447788889999************************************************************************* PP
GAGA_bind 242 yPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
yPLP+++++r+aR++grKmS++af+klL +LaaeG+dls+pvDLkdhWAkHGtn+++ti+
Ciclev10001778m 276 YPLPAVPNKRHARVGGRKMSGSAFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 335
***********************************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0016021 | Cellular Component | integral component of membrane |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 336 aa
Download sequence Send
to blast |
MDDGGHRENG RHKADQYKAA QGQWLMHHQP SMKQIMTIMA ERDAALQERN LAISEKKAAI 60
AERDMAFLQR DTAIAERNNA ILERDNAIAS LQYRENSLGG NMSSCPPGCQ ISRGVKHMHH 120
PQQHVHQLHH VSEAAYSREM HTGDALPVSP GASEAAKPRR YKRAKEPKVL SPNKKTAKSP 180
RKVKRENEDL NKVVFGKPSE WKSVQDLDGG DDDVNKQSTA SKSDWKGQVL GLNQVTFDES 240
TMPPPACSCT GVLRQCYKWG NGGWQSACCT TSLSMYPLPA VPNKRHARVG GRKMSGSAFN 300
KLLTRLAAEG HDLSHPVDLK DHWAKHGTNR YITIK*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
