PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10001613m
Common NameCICLE_v10001613mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRF
Protein Properties Length: 362aa    MW: 39760.3 Da    PI: 9.1476
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10001613mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC71.97.6e-2374118145
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                      d+epgrCrRtDGKkWRCs+++ +++k+CErH++r+r rsrk++e+
  Ciclev10001613m  74 DPEPGRCRRTDGKKWRCSKDAHPNSKYCERHMNRSRYRSRKPVES 118
                      79****************************************986 PP
2QLQ59.21.2e-201347236
              QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                     +FTa+Q+++L++Q+l++KyL a++PvPp+Ll++i+
  Ciclev10001613m 13 PFTASQWHELEHQALIFKYLKAGLPVPPDLLVPIR 47
                     9********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009517.7E-121248IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.2E-161347IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.5031348IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.4574118IPR014977WRC domain
PfamPF088794.4E-1975117IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MSGSGSLSSS VAPFTASQWH ELEHQALIFK YLKAGLPVPP DLLVPIRTSL KFLSSSLFHH  60
PTFGYCSYFG KKIDPEPGRC RRTDGKKWRC SKDAHPNSKY CERHMNRSRY RSRKPVESQN  120
TSQSLSTTVG VDIGGNRSSI GSGGGGGGGS RSLSFQNPPL QPLSTREGIC FRSNMSQSQM  180
AAIPYGIPNK EYSGQYRLQE LKPEGNDGVL SMASESLRGF TMNSSVDNSW CVTTSGSSSI  240
PLSDQRSGAF LQNSCLPMQT LQDFDSLIGN GATSKQQQQH YFFGREFDSS RSQKQEHQAL  300
QPLPDELPKT IDFGYYLDDQ RANKSSLSTT QLSMSTPIAS SKFFETSAHS SKDTSMDKFL  360
S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006432586.10.0growth-regulating factor 4 isoform X1
RefseqXP_006493631.10.0growth-regulating factor 4-like isoform X1
TrEMBLV4T8F00.0V4T8F0_9ROSI; Uncharacterized protein
STRINGXP_006493631.10.0(Citrus sinensis)
STRINGXP_006432586.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM143391019
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.13e-37growth-regulating factor 5