PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10001508m
Common NameCICLE_v10001508mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family TALE
Protein Properties Length: 380aa    MW: 43333.1 Da    PI: 6.4611
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10001508mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.33.1e-093053402055
                      HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                      +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Ciclev10001508m 305 YKWPYPSETEKVALAESTGLDQKQINNWFINQRKRH 340
                      4679*****************************885 PP
2ELK37.83.9e-13260281122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELK++LlrKYsgyL+sLkqE+s
  Ciclev10001508m 260 ELKNHLLRKYSGYLSSLKQELS 281
                      9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.7E-23113157IPR005540KNOX1
PfamPF037901.0E-23114156IPR005540KNOX1
SMARTSM012561.7E-28165216IPR005541KNOX2
PfamPF037915.9E-24169214IPR005541KNOX2
PfamPF037892.7E-10260281IPR005539ELK domain
SMARTSM011883.5E-7260281IPR005539ELK domain
PROSITE profilePS5121311.296260280IPR005539ELK domain
PROSITE profilePS5007113.038280343IPR001356Homeobox domain
SuperFamilySSF466896.84E-20281355IPR009057Homeodomain-like
SMARTSM003896.6E-13282347IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-27285346IPR009057Homeodomain-like
CDDcd000869.91E-12292344No hitNo description
PfamPF059201.4E-16300339IPR008422Homeobox KN domain
PROSITE patternPS000270318341IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MEGYNSLNEN TTPRGNFLYS SSQVVGSSAY GRASDGQMPI RSNSSNSFHL QSGGSTCFQS  60
ERAPPPETHT HHPTIVKTEA STSQLIYSLN MMREGHHHHH QSQQEGNESS ETEAIKAKII  120
SHPQYSSLLE AYVDCQKVGA PPEVVARLAA ARQEFESRQR SSLNSRDSTN KDPELDQFME  180
AYYDMLVKYR EELTRPIQEA MDFIRRIETQ LNMLSNGPVR IFNSTDDQKC EGVGSSEEDQ  240
ENSGGETELP EIDPRAEDRE LKNHLLRKYS GYLSSLKQEL SKKKKKGKLP KEARQKLLNW  300
WELHYKWPYP SETEKVALAE STGLDQKQIN NWFINQRKRH WKPSEDMQFM VMDGLHPQNA  360
ASLYMDGHYM ADGPYRLGP*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed only in the stems.
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006433688.10.0homeotic protein knotted-1
SwissprotO041351e-174KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLV4SGX40.0V4SGX4_9ROSI; Uncharacterized protein
STRINGXP_006433688.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65662335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-146KNOTTED-like from Arabidopsis thaliana