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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Ciclev10001400m |
| Common Name | CICLE_v10001400mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
BBR-BPC |
| Protein Properties |
Length: 396aa MW: 43866.1 Da PI: 9.9661 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Ciclev10001400m | genome | ICGC | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 388.5 | 1e-118 | 61 | 395 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yyepa..aslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllv 87
mdd g+re r+k+ +y+ a + l +++ +q+m+++aerda+++ernla+sekkaa+aerdmaflqrd+a+aern+a++erdn++++l+++
Ciclev10001400m 61 MDDGGHREngRHKAdQYKAAqgQWLMHHQpsMKQIMTIMAERDAALQERNLAISEKKAAIAERDMAFLQRDTAIAERNNAILERDNAIASLQYR 154
9*****999*****99*9544433433331145************************************************************* PP
GAGA_bind 88 ensla...salpvgvqvlsgtksidslqqlse..pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskk 176
ensl s++p+g+q+++g+k++++ qq+ + +++++ a+ re+++ +alp++ a+ea + ++ k r +ke+k +++kk++ks +
Ciclev10001400m 155 ENSLGgnmSSCPPGCQISRGVKHMHHPQQHVHqlHHVSEAAYS-REMHTGDALPVSPGASEAAKPRRYK---R---AKEPKVLSPNKKTAKSPR 241
**9878889********************55545555565555.**********988666665555554...4...444444455555556667 PP
GAGA_bind 177 kvkkesader.............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSv 241
kvk+e++d + sk+++k + l+ln+v++Dest+P+P+CsCtG+lrqCYkWGnGGWqSaCCtt++S+
Ciclev10001400m 242 KVKRENEDLNkvvfgkpsewksvqdldggdddvnkqstaSKSDWKGQVLGLNQVTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSM 335
777777664447788889999************************************************************************* PP
GAGA_bind 242 yPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
yPLP+++++r+aR++grKmS++af+klL +LaaeG+dls+pvDLkdhWAkHGtn+++ti+
Ciclev10001400m 336 YPLPAVPNKRHARVGGRKMSGSAFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 395
***********************************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0016021 | Cellular Component | integral component of membrane |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 396 aa
Download sequence Send
to blast |
MTDKNKIKKD IHKVEKFSCS LSLLPCTVLF PLPQILHLLI RVVSPLLAPS PANSAFCASQ 60
MDDGGHRENG RHKADQYKAA QGQWLMHHQP SMKQIMTIMA ERDAALQERN LAISEKKAAI 120
AERDMAFLQR DTAIAERNNA ILERDNAIAS LQYRENSLGG NMSSCPPGCQ ISRGVKHMHH 180
PQQHVHQLHH VSEAAYSREM HTGDALPVSP GASEAAKPRR YKRAKEPKVL SPNKKTAKSP 240
RKVKRENEDL NKVVFGKPSE WKSVQDLDGG DDDVNKQSTA SKSDWKGQVL GLNQVTFDES 300
TMPPPACSCT GVLRQCYKWG NGGWQSACCT TSLSMYPLPA VPNKRHARVG GRKMSGSAFN 360
KLLTRLAAEG HDLSHPVDLK DHWAKHGTNR YITIK*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
