PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10001389m | ||||||||
Common Name | CICLE_v10001389mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NAC | ||||||||
Protein Properties | Length: 398aa MW: 44540.3 Da PI: 4.8054 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 57 | 6.7e-18 | 12 | 117 | 5 | 128 |
NAM 5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 + F tde+l L++ ++g++l++ +vi++v+ y++ P++Lp + wy +++++++ +++g W+a+g++ e++s ++ Ciclev10001389m 12 VDFASTDENLFG-SLERMIRGSPLPC-NVINDVNPYNHMPSNLP------DGVWYLVCSKENTS---------AQHGQWRAKGETCEIFS-NSY 87 67999*****95.5************.99**************9......45799999987654.........5689*************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +g ++tL f++g+ p+ +ktdWvm+e+r+ Ciclev10001389m 88 IIGWRTTLEFFEGQVPNERKTDWVMQEFRI 117 ****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-24 | 7 | 150 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 25.016 | 8 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-9 | 11 | 117 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MCPPTASTPI DVDFASTDEN LFGSLERMIR GSPLPCNVIN DVNPYNHMPS NLPDGVWYLV 60 CSKENTSAQH GQWRAKGETC EIFSNSYIIG WRTTLEFFEG QVPNERKTDW VMQEFRITQK 120 RLYGDKKEEC ELCICLDNVQ DSSSLCRVFL SGKQSPNHEM QQKLFSANIN NETHSHSTEL 180 SFDKDKDDTR QVSIIRCEVS NDGESRTSAV MERPTNHAED NLPEADNFSE DDFLELHDLD 240 QPLSPSSSSD NSSGMTLSSD EYFDHLALLQ ELEPCKNKGV GPENAEYKYS FSTSHTPNEV 300 VIFPGSLINV EGSKPETGDI FKTESDSAMV NRTLDSRVLK QAVQGQKANY RGESPSSNSH 360 GQTSSFNGQI ALQNGGKKAA VGRMKKLKRK YFCFMPF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006434934.1 | 0.0 | NAC transcription factor 29 isoform X1 | ||||
Refseq | XP_024039765.1 | 0.0 | NAC transcription factor 29 isoform X1 | ||||
Refseq | XP_024039766.1 | 0.0 | NAC transcription factor 29 isoform X1 | ||||
Refseq | XP_024039767.1 | 0.0 | NAC transcription factor 29 isoform X1 | ||||
TrEMBL | V4V7V7 | 0.0 | V4V7V7_9ROSI; Uncharacterized protein | ||||
STRING | XP_006434934.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13708 | 10 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10490.1 | 5e-16 | NAC domain containing protein 52 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10001389m |
Entrez Gene | 18041001 |