PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10001346m | ||||||||
Common Name | CICLE_v10001346mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NAC | ||||||||
Protein Properties | Length: 408aa MW: 46510.7 Da PI: 7.318 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161.8 | 2.6e-50 | 32 | 157 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ ++s+ Ciclev10001346m 32 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIKSE 124 79***************************.89***************8778899**************************************** PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkktLvfy+g+apkg +t+W+m+eyrl Ciclev10001346m 125 NSRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 157 *******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-56 | 31 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.912 | 31 | 178 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.5E-25 | 33 | 157 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MAIAAANMSN NNESNDNENN DNKDDHEHDV VMPGFRFHPT EEELVEFYLR RKVEGKRFNV 60 ELITFLDLYR YDPWELPALA AIGEKEWFFY VPRDRKYRNG DRPNRVTTSG YWKATGADRM 120 IKSENSRSIG LKKTLVFYSG KAPKGIRTSW IMNEYRLPQH ETERYQKAEI SLCRVYKRPG 180 VEDHPSLPRS LPTSRASSSR SVSSMSAQSD KRLDPHHHHQ FGIERFQALS GQSSQQQMDI 240 AAEKMSTNTD QTDRSSSCSD VTTVLGLSKQ NVYRPNMASV SSALGLPPSL MEEQAASLTL 300 VPNCTTTLFP VALSTSSSSA ASSNATDEFH RLLAYQQASM NHQQQYYNYQ HHHQQQQHHS 360 HFPQLPPQSQ PLSVNMLPSP LPAAFSDRLW EWNPIPEANR EYNDPFK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-55 | 33 | 178 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-55 | 33 | 178 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-55 | 33 | 178 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-55 | 33 | 178 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-55 | 33 | 178 | 22 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-55 | 33 | 178 | 22 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-55 | 33 | 178 | 22 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-55 | 33 | 178 | 22 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-55 | 33 | 178 | 22 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-55 | 33 | 178 | 22 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-55 | 33 | 178 | 22 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-55 | 33 | 178 | 22 | 168 | NAC domain-containing protein 19 |
4dul_A | 2e-55 | 33 | 178 | 19 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-55 | 33 | 178 | 19 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in aerial organs in early stages of seedling development. {ECO:0000269|PubMed:17653269}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00257 | DAP | Transfer from AT2G02450 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006431380.1 | 0.0 | NAC domain-containing protein 35 | ||||
Swissprot | Q9ZVP8 | 1e-123 | NAC35_ARATH; NAC domain-containing protein 35 | ||||
TrEMBL | A0A2H5QU86 | 0.0 | A0A2H5QU86_CITUN; Uncharacterized protein | ||||
TrEMBL | V4SZW9 | 0.0 | V4SZW9_9ROSI; Uncharacterized protein | ||||
STRING | XP_006431380.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5436 | 27 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.1 | 1e-108 | NAC domain containing protein 35 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10001346m |
Entrez Gene | 18041841 |
Publications ? help Back to Top | |||
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