PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10001255m
Common NameCICLE_v10001255mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 427aa    MW: 46892.5 Da    PI: 9.6017
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10001255mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00034195217223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                       C+ Cg++F+  ++L+ H+ + H
  Ciclev10001255m 195 ACSQCGEVFPKIESLELHQAVrH 217
                      6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280194217IPR007087Zinc finger, C2H2
PROSITE profilePS501578.808194222IPR007087Zinc finger, C2H2
SuperFamilySSF563998.06E-28219425No hitNo description
Gene3DG3DSA:3.90.228.106.6E-14220424IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MKERAGYVTI LLNLLALLFM ALVTFLPEPT ESKKQPAAAL PPSKRNRKQQ KVQKQKEKQP  60
SSWDQIKNLL TCKQIEVSKV HDPAAKNVNG YSRLGSSCSS ICSFKDVVHG NTKVVHRADN  120
SPESSTLGQE TGLLSRKAVN GSSTRSASVS ARSNGCRTYS SSSRGMQFRK LSGCYECHTI  180
IDPSRFPSPR TTICACSQCG EVFPKIESLE LHQAVRHAVS ELGPEDSSRN IVEIIFKSSW  240
LKQNSPMCKI ERILKVHNTQ RTIQRFEDCR DAVKTRALNS TRKNPRCAAD GNELLRFHCT  300
TLSCNLGSRG SSTLCGSVPG CSVCTIIRHG FQGKECKGVR TTASSGRAHD SLKNCTDERR  360
AMLVCRVIAG RVRRVTDDAP SEEDSVSGGS YDSVAGYTGV YSNLEELFVF NPRAILPCFV  420
VIYKSL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435171.10.0uncharacterized protein LOC18041417
TrEMBLV4TFF40.0V4TFF4_9ROSI; Uncharacterized protein
STRINGXP_006435171.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-163C2H2-like zinc finger protein