PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10001224m | ||||||||
Common Name | CICLE_v10001224mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C2H2 | ||||||||
Protein Properties | Length: 431aa MW: 47468.4 Da PI: 9.9884 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00022 | 199 | 221 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg+ F ++L+ H+ + H Ciclev10001224m 199 SCPECGQIFMKAETLELHQAVrH 221 8******************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.016 | 198 | 226 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 198 | 221 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 1.92E-26 | 223 | 429 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 5.5E-18 | 224 | 428 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MAKPRNQRKH LTEMQQSKKN QPQKSERPPP SWAAVRGIFT CKNLQAPQQQ QKKPEQHQQQ 60 EKKQKQKQQQ DQATDETSKK CKKMKCSGSL CSNTKVMQRP EAAASPELQR KRASMGSSGK 120 NESSSRSMKT PLYELNGANG VISSTNSSLS VSSNSSIAGG GSFRGMPFRR LSGCYECRMV 180 VDPVLGFARD PSLRGSICSC PECGQIFMKA ETLELHQAVR HAVSELGPED TSKNIVEIIF 240 QSSWLKKQTP ICKIDRILKV HNTQRTIAKF EEYRDSIKAK ATKLPKKHPR CIADGNELLR 300 FHCTTFTCSL GLNGSSNLCN SIPQCNVCSI IKNGFKVTQE TNKGLRGNGI LTTATSGKAH 360 DKAGVEDGSD ARAMLVCRVI AGRVKKSMEG NLEEYDSVAG AMGMYSNLDE LYVFNPKAIL 420 PCFVVIYSGF * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006434130.1 | 0.0 | uncharacterized protein LOC18040168 | ||||
TrEMBL | V4T7C6 | 0.0 | V4T7C6_9ROSI; Uncharacterized protein | ||||
STRING | XP_006434130.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1916 | 28 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75710.1 | 1e-104 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10001224m |
Entrez Gene | 18040168 |