PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10001199m | ||||||||
Common Name | CICLE_v10001200mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NAC | ||||||||
Protein Properties | Length: 435aa MW: 48294.6 Da PI: 4.4125 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.8 | 3e-51 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtd el+++yLk+kv g+k+ + e+i+evdiyk+ PwdLp k ++++++ +wyfF++r+kkya+g r nrat+ gyWk+tgkd++v Ciclev10001199m 6 LPPGFRFHPTDVELIKYYLKRKVMGRKFGF-EAIAEVDIYKHAPWDLPdKsSLRSGDLKWYFFCPREKKYANGARMNRATEFGYWKTTGKDRPV 98 79*************************999.89**************96346677888************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++e+vg+ ktLvf++g+ap+g +tdWvmheyr+ Ciclev10001199m 99 QY-NNEVVGMIKTLVFHRGKAPRGDRTDWVMHEYRI 133 *9.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.16E-59 | 3 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.858 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.5E-27 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 435 aa Download sequence Send to blast |
MGKTSLPPGF RFHPTDVELI KYYLKRKVMG RKFGFEAIAE VDIYKHAPWD LPDKSSLRSG 60 DLKWYFFCPR EKKYANGARM NRATEFGYWK TTGKDRPVQY NNEVVGMIKT LVFHRGKAPR 120 GDRTDWVMHE YRIDEPGLSE RGVVQDAYVL CIVFQKDGPG PRNGAQYGAP FREEDWENDE 180 DVDCVDVISS AVLPPPVPSQ NSPVAESSHI PERLCIGTSE SCLSDTIPPT SNMLPPVPVI 240 NDVSREVAQD LSEDDILAML AYFTEDNNLI SNENGQIEQY DNVHDGNIEA SPRLDGVDIY 300 NDLGDLENMV GFSGGEYDFF PAENSNYNLD GAILGDNAPF IELLDLDAPL NCPAEAREPE 360 QAHCNGPYTD QKCYNSEQSC YNVNPCFSQS PSMLPQDSVR RNANEAPLNH GAAKLSVGSS 420 RASEDSRSGG SHCP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-48 | 1 | 157 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-48 | 1 | 157 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-48 | 1 | 157 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-48 | 1 | 157 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-48 | 1 | 157 | 15 | 169 | NAC domain-containing protein 19 |
3swm_B | 8e-48 | 1 | 157 | 15 | 169 | NAC domain-containing protein 19 |
3swm_C | 8e-48 | 1 | 157 | 15 | 169 | NAC domain-containing protein 19 |
3swm_D | 8e-48 | 1 | 157 | 15 | 169 | NAC domain-containing protein 19 |
3swp_A | 8e-48 | 1 | 157 | 15 | 169 | NAC domain-containing protein 19 |
3swp_B | 8e-48 | 1 | 157 | 15 | 169 | NAC domain-containing protein 19 |
3swp_C | 8e-48 | 1 | 157 | 15 | 169 | NAC domain-containing protein 19 |
3swp_D | 8e-48 | 1 | 157 | 15 | 169 | NAC domain-containing protein 19 |
4dul_A | 7e-48 | 1 | 157 | 12 | 166 | NAC domain-containing protein 19 |
4dul_B | 7e-48 | 1 | 157 | 12 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the epidermal cells of the root apical region. {ECO:0000269|PubMed:20388856}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006432239.1 | 0.0 | NAC domain-containing protein 82 isoform X1 | ||||
Refseq | XP_006432240.1 | 0.0 | NAC domain-containing protein 82 isoform X1 | ||||
Refseq | XP_006464643.1 | 0.0 | NAC domain-containing protein 82-like | ||||
Swissprot | Q9FY82 | 1e-106 | NAC82_ARATH; NAC domain-containing protein 82 | ||||
TrEMBL | V4V129 | 0.0 | V4V129_9ROSI; Uncharacterized protein | ||||
STRING | XP_006464643.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006432239.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3692 | 25 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09330.4 | 1e-108 | NAC domain containing protein 82 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10001199m |
Entrez Gene | 18042142 |
Publications ? help Back to Top | |||
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