PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10001058m
Common NameCICLE_v10001058mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 468aa    MW: 51204 Da    PI: 6.205
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10001058mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.35.2e-11324382563
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      kr++r   NR +A rs +RK  +i eLe+kv++L++e ++L  ++  l+  +a l+se+
  Ciclev10001058m 324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSEN 382
                      9***********************************************99999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.9E-18320384IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.093322385IPR004827Basic-leucine zipper domain
PfamPF001701.2E-9324382IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.89E-11324375No hitNo description
Gene3DG3DSA:1.20.5.1701.5E-11324379No hitNo description
CDDcd147033.02E-23325376No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MSPDSNKRPG IPPSHPNNNN PNAISLPFPH MVLPSSHYRP LLDSLPPLSP SMSSFSDPNS  60
GNNTTSVCID ERVVNSLGLS IPSPVNRVTN NNGSRVSENL PPRRGHRRSS SDIPLGFSAM  120
IQSSTQLIPI GSKGAIEKPI QLVKQESEWN NVKKDASRNV EGMGERKSEE DVADDLFNEY  180
MNLENIDTLN SSCTEDKDMD SRASGSKTNG CESSDNEVES RVYGRSSSGI LSEKREGIKR  240
SACGDIAPTV RHCRSVSMDS YMGNLPFDDE SLRLPPGGQL SPGNPSDGNL AKMSLEFNGE  300
FNDAELKKIW ANEKLAEIAL SDPKRAKRIL ANRQSAARSK ERKMRYISEL EQKVQTLQTE  360
ATTLSAQVTI LQRDSAGLTS ENNELKFRLQ AMEQQAQLKD ALNEALAAEV QRLKLAAAEV  420
NGEAQLSSRM AQQLSINHQM FQMQHQQQNQ DAGAASAWPT ATWAAKS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435132.10.0transcription factor RF2a
TrEMBLV4T5A10.0V4T5A1_9ROSI; Uncharacterized protein
STRINGXP_006435132.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42242757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.31e-114bZIP family protein