PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10001051m
Common NameCICLE_v10001051mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 469aa    MW: 50845.3 Da    PI: 9.7903
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10001051mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_150.93.4e-16263318459
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                       kr rr+ +NRe+ArrsR+RK+a + eLe+ v +L  eN++L k+l  +++++ + 
  Ciclev10001051m 263 AKRVRRMLSNRESARRSRRRKQAHMTELETQVSQLRVENSSLLKRLTDISQKYNEA 318
                      79*****************************************9999999988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.9E-20260324IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.3E-12261316No hitNo description
PROSITE profilePS5021711.702262317IPR004827Basic-leucine zipper domain
PfamPF001704.6E-14263316IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.84E-12264314No hitNo description
PROSITE patternPS000360267282IPR004827Basic-leucine zipper domain
PfamPF124981.1E-43331457IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MTPIRILFIL FLTHPQTSKP KNKTARITKV TKIWRKMDRV FSVGEISEQF WSNPPDASSK  60
MNRSESEWAF QRFLQEAQQP TSSGDSKNDS VVEIKSAHIS NNNNNNNNNN HTDNQNDNVK  120
AAGGGGNVSK AATSALSFDG TQNLEDYQAV LKSKLNLACA AVALSRASCA RPQDTADRAD  180
SGSQSSNTSQ LGSQAPKGPV HDLSRSQNKD VNGLHGIPSI STTLKKPLVP VRSATSGSSR  240
DLSEDDEAEG ETATTENMDP VDAKRVRRML SNRESARRSR RRKQAHMTEL ETQVSQLRVE  300
NSSLLKRLTD ISQKYNEAAV DNRVLKADVE TLRAKVKMAE ETVKRITGLN PLLQGSPEMS  360
SMSMSSFGGS HSDTSADATV PLQDDPKHHF FQPPSDNPVS SHDLRVNNAF SDISSVENVQ  420
PNAGATAAAS GNKIGRTVSM QRVASLEHLQ KRIRGGVSPC GPNSSGEQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276283RRSRRRKQ
2278283SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006432930.10.0light-inducible protein CPRF2
RefseqXP_006471677.20.0light-inducible protein CPRF2
SwissprotQ990901e-129CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLV4T4710.0V4T471_9ROSI; Uncharacterized protein
STRINGXP_006432930.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68462743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.27e-61bZIP family protein
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]