PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10000627m
Common NameCICLE_v10000627mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Trihelix
Protein Properties Length: 611aa    MW: 67599.9 Da    PI: 5.9764
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10000627mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.51e-2970154187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW++qe+laL+++r++m++ +r+++lk+plWee+s+k++e g++rs+k+Ckek+en+ k+++++k+g+ ++  ++ +++++fdqlea
  Ciclev10000627m  70 RWPRQETLALLKIRSDMDQVFRDSSLKGPLWEEISRKLAELGYNRSAKKCKEKFENVYKYHRRTKDGRTGK--PEGKHYKFFDQLEA 154
                      8********************************************************************96..55568*******85 PP
2trihelix106.71.6e-33415500187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW+k ev+aLi++r+e+ ++++++  k+plWee++++mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +++s+tcpyfdql+a
  Ciclev10000627m 415 RWPKAEVQALIKFRTELANKYQENGPKGPLWEEIAAAMRSVGYNRNAKRCKEKWENINKYFKKVKESNKKR-PDDSKTCPYFDQLDA 500
                      8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007179.8E-467129IPR001005SANT/Myb domain
CDDcd122035.34E-2669134No hitNo description
PfamPF138373.6E-2069155No hitNo description
PROSITE profilePS500907.21369127IPR017877Myb-like domain
SMARTSM007175.8E-4412474IPR001005SANT/Myb domain
PfamPF138372.4E-23414501No hitNo description
Gene3DG3DSA:1.10.10.603.7E-5414471IPR009057Homeodomain-like
PROSITE profilePS500907.549414472IPR017877Myb-like domain
CDDcd122033.12E-27414479No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MMLGEGDSSS ALLASSSSDA NAVAAASIGG AQDGGAAASD VGGGGSNNSA TEEDKAGRND  60
DGDRSFGGNR WPRQETLALL KIRSDMDQVF RDSSLKGPLW EEISRKLAEL GYNRSAKKCK  120
EKFENVYKYH RRTKDGRTGK PEGKHYKFFD QLEALDHHHH HHSTAPQATT KPQAPLMQAI  180
PWTMNPPSSV PAHIKNVVTS ISAANPIQAV PQSTVIAPPT NPTVSAAAAP PLAQPVNNLP  240
YSFANVSPNL FSSSTSSSTA SEEYSEERPA GTRKRKWKMF FKRLTKQVIK KQEELQYRFL  300
EEMERRERER IVRDEAWRVQ EMARIDREHE ILIQERATAA AKDAAVIAFL QNISGQQQIP  360
VKENPQPPPP TVVVQPVPAV PPQPQPPATT TPNNKPAANN NNYGGNVVMS TSSSRWPKAE  420
VQALIKFRTE LANKYQENGP KGPLWEEIAA AMRSVGYNRN AKRCKEKWEN INKYFKKVKE  480
SNKKRPDDSK TCPYFDQLDA LYREKSNKSS ENNSGCYGNV KAVNHNTAPL MVLPEQQWPL  540
HNNDHLQGQN QPPLNVNQIQ EDDEEEEEEE EGNSEEGDEE EEEEEEGNEG YEIVPNKAAA  600
AAAASMGNAE *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1267275RPAGTRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434456.10.0trihelix transcription factor GT-2
SwissprotQ391171e-139TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLV4TDH40.0V4TDH4_9ROSI; Uncharacterized protein
STRINGXP_006434456.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59952847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-125Trihelix family protein