PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10000454m
Common NameCICLE_v10000454mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Trihelix
Protein Properties Length: 703aa    MW: 79793 Da    PI: 8.2795
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10000454mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.21e-13203265269
         trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 
                      W+ +e laL+++r+++e+++ +       We+vs++++e g++rs+++Ckek+e+ ++ + +i+ +++
  Ciclev10000454m 203 WSLDELLALLRIRSSLENWFPEL-----TWEHVSRRLEELGYKRSAEKCKEKFEEESRNFSNINYNKN 265
                      ********************987.....9*******************************99987766 PP
2trihelix91.68e-29554641186
         trihelix   1 rWtkqevlaLiearremeerlrrgk...lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      rW+++ev aLi++r ++ ++ ++++   ++ plWe++s+ m+e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql 
  Ciclev10000454m 554 RWPRDEVFALINLRCNLYNNGEDKEgaaSRVPLWERISQGMSELGYKRSAKRCKEKWENINKYFRKTKDANKKR-SIDSRTCPYFHQLS 641
                      8**************999999985333499*******************************************8.78889*******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071713199256IPR001005SANT/Myb domain
PfamPF138371.2E-8201264No hitNo description
PROSITE profilePS500906.156203254IPR017877Myb-like domain
SMARTSM007171.1551616IPR001005SANT/Myb domain
PfamPF138371.1E-18553641No hitNo description
CDDcd122032.24E-24553621No hitNo description
PROSITE profilePS500906.411554614IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MPTNNFKRCD VTLLSSNGKG RAPLGPPEID DQEAVQCLTV SPAEACENSS PSSLNKIGPI  60
LCIKRGKKEK KRGKLIKLVR KINTMFDEVP ADQLHQFIAA ASRASVVPFP LSFSTSSSSS  120
SLHLHHHHHH HHHGSSAFPA SFDPFSSTTT SQQVQQPHQL LHSLPQQKIN EEKEENRSSS  180
SSLVGMNLEV VQRERLIQKD PAWSLDELLA LLRIRSSLEN WFPELTWEHV SRRLEELGYK  240
RSAEKCKEKF EEESRNFSNI NYNKNYRTLF SEFDDDEEQE LYHRGQNSPH GHNVADEANK  300
KMDQQQPREE EEEEVEEEDK IMEQEAEHPR NDQTVANKSS CYHHQDKEKL SKGKKKRKFR  360
EKNFERFKGF CEDIVKKMMA QQEEMHNKLI EDLVKRDEEK VAREEAWKKQ QIDRFNKELE  420
IRASEQAITS NRQATIIKFL TRFSSSSSSS SSSTSEESGV NKHKVPNYSI PNPLPSSNSL  480
ILAQKPNQTQ NPRSNLAPTS VPKKQTSSTI AISPQNPSSA AAQNKPLALT STPIQISDSQ  540
KLITSDGKDD IGKRWPRDEV FALINLRCNL YNNGEDKEGA ASRVPLWERI SQGMSELGYK  600
RSAKRCKEKW ENINKYFRKT KDANKKRSID SRTCPYFHQL STLYNQGTLV APSDGTENRP  660
TALPENHHGS SQGGNSSTHS TMPVAQGDKN LVQISPALDF EF*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006471910.10.0trihelix transcription factor GTL2
RefseqXP_024038652.10.0trihelix transcription factor GTL2
TrEMBLV4T9I80.0V4T9I8_9ROSI; Uncharacterized protein
STRINGXP_006432981.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82682838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.14e-74Trihelix family protein