PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10000383m

Common Name

CICLE_v10000383mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 754aa MW: 86079.2 Da PI: 7.3708

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10000383m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	98.3	8.1e-31	71	158	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA+++GFs+r+s ++s+r+g+i++r+ vCs+eg+r+ ++++ +++r+r+ tr+gCka+++vkk+ +gkw v+kl +eHnHel+p Ciclev10000383m 71 FYNSYARRIGFSTRVSVYQRSRRDGSIICRQIVCSREGFRRGSSEN--RSKRQRTITRVGCKAQMTVKKQGSGKWAVSKLIKEHNHELVP 158 9***************************************9988..999***********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.8E-28	71	158	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-29	279	369	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.769	563	595	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.2E-9	568	593	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.6E-8	570	597	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 754 aa Download sequence Send to blast
MEFEPLDIEN GVIEFDEMRN SNGEDDSERP SDYYDHVLPD NSRNFETLNG DPNLEPFEGM 60 EFDSEQAARI FYNSYARRIG FSTRVSVYQR SRRDGSIICR QIVCSREGFR RGSSENRSKR 120 QRTITRVGCK AQMTVKKQGS GKWAVSKLIK EHNHELVPPD KVHCLRSHRH VSGPARSLID 180 TLQAAGMGPS GVMSVLIKES GGVNNVGFTK VDCQNYMSSS RQRTLGSGGQ VVIDNLKQMQ 240 AEDPSFFCAF QGDFENTTGN IFWADANSRM NYSYFGDTVT FDTTYRMNRY RIPFAPFTGL 300 NHHGQPVLFG CALLLNESEA SFIWLFEAWL AAMSGRSPNS ITTDQDRIIR AAVAQVFPGT 360 RHRFCKWNVF REAQERLSDV YQSHPHFEAE FQRCINMTET VDEFESCWES LIRRYNLVGN 420 EWLQSMYNVR QQWVPVYLRD TFFGEMSMTQ ASDNINSYFD GYINASTNIQ ALIKQYEKAI 480 ASRHEKEVKA DYDTVNTEPV LKTPSPMEKQ VANLYTRKIF MKFQEELVET LAYPATIVND 540 TGSEIIYRVA KFGEEQKAHF VRYNIFEKKA SCSCQLFEFS GIICRHILAV FRVTNILTLP 600 SHYILKRWTR NAKSGVLLNG HVLGLASSRQ ESSAARYDNL CREVIKYVEE GAESAHIYNM 660 AMDVLREAAK KVAAAKKYGP GVTQNSLFSG CQQHHSCSVD QDKKIQELTV ELENASQRCE 720 AYRTKLLAVL KDMEEEKTKM LVKVENVRLD LKG*

Sequence ? help Back to Top

Protein Sequence Length: 754 aa Download sequence Send to blast

MEFEPLDIEN GVIEFDEMRN SNGEDDSERP SDYYDHVLPD NSRNFETLNG DPNLEPFEGM  60
EFDSEQAARI FYNSYARRIG FSTRVSVYQR SRRDGSIICR QIVCSREGFR RGSSENRSKR  120
QRTITRVGCK AQMTVKKQGS GKWAVSKLIK EHNHELVPPD KVHCLRSHRH VSGPARSLID  180
TLQAAGMGPS GVMSVLIKES GGVNNVGFTK VDCQNYMSSS RQRTLGSGGQ VVIDNLKQMQ  240
AEDPSFFCAF QGDFENTTGN IFWADANSRM NYSYFGDTVT FDTTYRMNRY RIPFAPFTGL  300
NHHGQPVLFG CALLLNESEA SFIWLFEAWL AAMSGRSPNS ITTDQDRIIR AAVAQVFPGT  360
RHRFCKWNVF REAQERLSDV YQSHPHFEAE FQRCINMTET VDEFESCWES LIRRYNLVGN  420
EWLQSMYNVR QQWVPVYLRD TFFGEMSMTQ ASDNINSYFD GYINASTNIQ ALIKQYEKAI  480
ASRHEKEVKA DYDTVNTEPV LKTPSPMEKQ VANLYTRKIF MKFQEELVET LAYPATIVND  540
TGSEIIYRVA KFGEEQKAHF VRYNIFEKKA SCSCQLFEFS GIICRHILAV FRVTNILTLP  600
SHYILKRWTR NAKSGVLLNG HVLGLASSRQ ESSAARYDNL CREVIKYVEE GAESAHIYNM  660
AMDVLREAAK KVAAAKKYGP GVTQNSLFSG CQQHHSCSVD QDKKIQELTV ELENASQRCE  720
AYRTKLLAVL KDMEEEKTKM LVKVENVRLD LKG*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006435469.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_006473867.1	0.0	protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A067GZX0	0.0	A0A067GZX0_CITSI; Uncharacterized protein
TrEMBL	V4V971	0.0	V4V971_9ROSI; Uncharacterized protein
STRING	XP_006473867.1	0.0	(Citrus sinensis)
STRING	XP_006435469.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Ciclev10000383m
Entrez Gene	18042839

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]