PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10000100m
Common NameCICLE_v10000100mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family SBP
Protein Properties Length: 1103aa    MW: 121713 Da    PI: 8.1434
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10000100mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.99.1e-41172249178
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      +Cqv++C++dls+ak+yhrrhkvCe hsk++++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+
  Ciclev10000100m 172 MCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 249
                      6**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.0E-34168234IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.855170247IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-37171252IPR004333Transcription factor, SBP-box
PfamPF031101.7E-29173246IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1103 aa     Download sequence    Send to blast
MEEVGAQVAP SILMHQRLSS RLCEAPTMTM TMTMAKKRHL SYQAQSQNHY GGEQQNWNPK  60
LWDWDSVGFV GKPVVDSDPE VLRLGGATAS ESPNKTTDNI NYNYNYNNQK KGNTTTTSAV  120
TVGNVEDDGR LDLNLGGGLT AVDVEQPEPP VVTSKPNKRV RSGSPGTAPY PMCQVDNCKE  180
DLSNAKDYHR RHKVCELHSK STKALVGKQM QRFCQQCSRF HPLSEFDEGK RSCRRRLAGH  240
NRRRRKTQPE DITSRMLIHG HGNQSNNPTA NVDIVNLLTA LARAQGKTED RSISCSSVPD  300
REQLLMILSK INSLPLPADL AAKLHNFGSL NRKTPVHTST DVQNRLNENT SSPSTMDLLA  360
VLSSTLTAPS PDTLAAHSQR SSHSSDSEKT KSTCPEQATP NFLKRTTMDF PSVGGERSST  420
SYQSPVEDSD GQNQETRVNL PLQLFSSSPE DDSPPKLSSS RKYFSSDSSN PIEERSPSSS  480
PVVQTFFPMQ STSETVKSEK LSIGREVNAN VEGNRSRGSI MPLELFRGSN KAADNCSFQS  540
FPYQAGYTSS SGSDHSPSSL NSDAQDCTGR IIFKLFDKDP SQFPGTLRKE IYNWLSNSPS  600
EMESYIRPGC VILSLYVSMP YATWEQLEGN LLQRINSLVQ DSDSDFWRNA RFLVHTGKQL  660
ASHKDGNIRV CKSWRTWSSP ELISVSPLAV VGGQELSFKL RGRNLTNLGT KIHCTFMGGY  720
ASQEVTSSTC QGSIYDEIIL AGLKIQDTSP SVLGRFFIEV ENGFKGNSFP VIIADATICK  780
ELSLLESEFG AEAKVCDVIS EHQAHEYGRP RSREEVLHFL NELGWLFQRK RASSIVKGSD  840
YSLSRFKFLL VFSVDRGCCA LVKAILDILV EGNLSMDGLS RESLEMLWEI QLLNRAVKMK  900
CRRMVDLLIH YSLTSSNDTP QKYIFPPNLA GPGGITPLHL AACTSDSDDI IDALTNDPQE  960
IGPSSWNSIL DASGHSPYSY ALMKNNHAYN KLVARKLADR RNGQVTIPVG VEIEQSGLAK  1020
EQVHGLSSQF KQRGKSCTKC AVAAAKLNKR VRGSQGLLNR PYIHSMLAIA AVCVCVCLFL  1080
RGSPDIGLVA PFKWENLDFG PK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-31163246184squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in vasculature of aerial parts. Expressed in cotyledons and leaf petioles. {ECO:0000269|PubMed:15703061}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269|PubMed:15703061}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00155DAPTransfer from AT1G20980Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435483.10.0squamosa promoter-binding-like protein 14 isoform X1
SwissprotQ8RY950.0SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBLA0A067H2Z60.0A0A067H2Z6_CITSI; Uncharacterized protein
TrEMBLV4SLU40.0V4SLU4_9ROSI; Squamosa promoter-binding protein 12
STRINGXP_006435483.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39992554
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.10.0squamosa promoter binding protein-like 14
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Liu J, et al.
    Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.).
    Front Plant Sci, 2016. 7: p. 21
    [PMID:26870051]