PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10000076m
Common NameCICLE_v10000065mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 1155aa    MW: 128668 Da    PI: 9.658
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10000076mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.12e-084379341
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41
                      W++ E +++++a + +G++ Wk++a+ +  +R+++++ 
  Ciclev10000076m 43 QWSKGELQRFYEAYRNYGKD-WKKVAAQVR-NRSAEMVE 79
                     6*****************99.*********.****9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.0123992IPR017884SANT domain
SMARTSM007170.00254088IPR001005SANT/Myb domain
SuperFamilySSF466893.3E-94087IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.1E-54383IPR009057Homeodomain-like
PfamPF002491.4E-74383IPR001005SANT/Myb domain
CDDcd001671.98E-44478No hitNo description
SMARTSM011356.2E-58653754IPR033471DIRP domain
PfamPF065843.2E-33653753IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1155 aa     Download sequence    Send to blast
MAPTRKSRSV NKRYANEVSP AKDVISPSKS KQKKKLSDKL GPQWSKGELQ RFYEAYRNYG  60
KDWKKVAAQV RNRSAEMVEA LYNMNRAYLS LPEGTASVVG LIAMMTDHYN VMEGSDSERE  120
SNDASEMPRK SQKRKRAKVQ LSASKEDISQ SWSMAATGGC LSLLKRSRID GNQPRAVKKR  180
TPRFPVSYSQ KKDDRDDYIP LNKKDRRSAV DANDDEVAHV AALALTEASQ RGGSPQVSQS  240
PHKKTEHGKS SPVQIWDKMF PPAETAHPDA REALNEEGCP EARILNRRPE NGAYTRARKS  300
LMDMEGVGTV EVHQKGKKFY RKKMKVEEVR NSLSDDEGEA CSGTEEGLSS RKGKVGSEIS  360
NAKNDHLPLQ MQRKRSKKLF FGDESTALNA LQTLADLSLM LPDSTMESES SVQLKEERTA  420
FDIDDKSSAP EETSTSHPKE KIKHLGPKEK ALNTITEAED IIPRKSKLGR YSGNDVETVA  480
EVKEQPEPPN SMSKRKRKPV LSKKISNSEA LTDTHMTRTL ESEALAEEHN KFASKGKRTS  540
QNSAQSKQWK PGRVLEGSSV NDQNRASIDL VAPTAQAPVA SPASLPTKHQ SRRKMDLKRK  600
LSSKEMKFSE NSLKTQPNKN SLSQEDRLLS VKEKLSGCLS SNMVRRWCTF EWFYSAIDYP  660
WFSNREFVEY LNHVGLGHIP RLTRVEWGVI RSSLGKPRRL SKRFLHDERE KLKQYRESVR  720
KHYAELRTGV REGLPRDLPR PLSVGQRVIA IHPKTRELHD GSVLTIDHDK CRVQFDRPEL  780
GVEFVMDIDS MPSNPLDNMP EALRRQISAD KFSAISKELQ VNGHPNFGSP MLFASDGHLE  840
KAPILPNTLQ KQAKGDMNHA LPQAKSLATD IVSAQQAAYG QLCTVPQIQA REATVRALSE  900
EALLMELKNT NNDILESQNG GESSLKDSEP LKKHIATASS ALLQVRQCNT HPESSRPSWP  960
MHPANVKMLD NSHVSQESGS AVAEIVNGSR LKAHTMVDAA VKAISTVKEG EDAYTKIGEA  1020
LDHIDKRQLT SDPRVSVIRS PEQVNGSLGH HNHFVSGTCD PQPTNNASGT KLQDVSDKNE  1080
AQIPSELITS CVATLLMIQT CTERHTPADV AQIIDSAVSS LHPCCPQNLP IYREIEMCMG  1140
RIKTQILALI PTSI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006433343.10.0protein ALWAYS EARLY 2 isoform X3
TrEMBLV4TAE80.0V4TAE8_9ROSI; Uncharacterized protein
STRINGXP_006433342.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding