PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10000068m | ||||||||
Common Name | CICLE_v10000065mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB_related | ||||||||
Protein Properties | Length: 1201aa MW: 134051 Da PI: 9.4418 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26 | 2.1e-08 | 43 | 79 | 3 | 41 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 W++ E +++++a + +G++ Wk++a+ + +R+++++ Ciclev10000068m 43 QWSKGELQRFYEAYRNYGKD-WKKVAAQVR-NRSAEMVE 79 6*****************99.*********.****9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.012 | 39 | 92 | IPR017884 | SANT domain |
SMART | SM00717 | 0.0025 | 40 | 88 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.45E-9 | 40 | 87 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-7 | 43 | 83 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.4E-5 | 43 | 83 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.27E-4 | 44 | 78 | No hit | No description |
SMART | SM01135 | 6.2E-58 | 653 | 754 | IPR033471 | DIRP domain |
Pfam | PF06584 | 3.4E-33 | 653 | 753 | IPR033471 | DIRP domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1201 aa Download sequence Send to blast |
MAPTRKSRSV NKRYANEVSP AKDVISPSKS KQKKKLSDKL GPQWSKGELQ RFYEAYRNYG 60 KDWKKVAAQV RNRSAEMVEA LYNMNRAYLS LPEGTASVVG LIAMMTDHYN VMEGSDSERE 120 SNDASEMPRK SQKRKRAKVQ LSASKEDISQ SWSMAATGGC LSLLKRSRID GNQPRAVKKR 180 TPRFPVSYSQ KKDDRDDYIP LNKKDRRSAV DANDDEVAHV AALALTEASQ RGGSPQVSQS 240 PHKKTEHGKS SPVQIWDKMF PPAETAHPDA REALNEEGCP EARILNRRPE NGAYTRARKS 300 LMDMEGVGTV EVHQKGKKFY RKKMKVEEVR NSLSDDEGEA CSGTEEGLSS RKGKVGSEIS 360 NAKNDHLPLQ MQRKRSKKLF FGDESTALNA LQTLADLSLM LPDSTMESES SVQLKEERTA 420 FDIDDKSSAP EETSTSHPKE KIKHLGPKEK ALNTITEAED IIPRKSKLGR YSGNDVETVA 480 EVKEQPEPPN SMSKRKRKPV LSKKISNSEA LTDTHMTRTL ESEALAEEHN KFASKGKRTS 540 QNSAQSKQWK PGRVLEGSSV NDQNRASIDL VAPTAQAPVA SPASLPTKHQ SRRKMDLKRK 600 LSSKEMKFSE NSLKTQPNKN SLSQEDRLLS VKEKLSGCLS SNMVRRWCTF EWFYSAIDYP 660 WFSNREFVEY LNHVGLGHIP RLTRVEWGVI RSSLGKPRRL SKRFLHDERE KLKQYRESVR 720 KHYAELRTGV REGLPRDLPR PLSVGQRVIA IHPKTRELHD GSVLTIDHDK CRVQFDRPEL 780 GVEFVMDIDS MPSNPLDNMP EALRRQISAD KFSAISKELQ VNGHPNFGSP MLFASDGHLE 840 KAPILPNTLQ KQAKGDMNHA LPQAKSLATD IVSAQQAAYG QLCTVPQIQA REATVRALSE 900 EALLMELKNT NNDILESQNG GESSLKDSEP LKKHIATVLV QLKEANDQAC GFRELCFGIS 960 CYLSLQFHTL TWRRSLIDCF DMQASSALLQ VRQCNTHPES SRPSWPMHPA NVKMLDNSHV 1020 SQESGSAVAE IVNGSRLKAH TMVDAAVKAI STVKEGEDAY TKIGEALDHI DKRQLTSDPR 1080 VSVIRSPEQV NGSLGHHNHF VSGTCDPQPT NNASGTKLQD VSDKNEAQIP SELITSCVAT 1140 LLMIQTCTER HTPADVAQII DSAVSSLHPC CPQNLPIYRE IEMCMGRIKT QILALIPTSI 1200 * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006433346.1 | 0.0 | protein ALWAYS EARLY 2 isoform X2 | ||||
TrEMBL | V4V3V4 | 0.0 | V4V3V4_9ROSI; Uncharacterized protein | ||||
STRING | XP_006433342.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 0.0 | DNA binding |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10000068m |
Entrez Gene | 18040444 |