PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_48074
Common NameKK1_046688
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family SBP
Protein Properties Length: 367aa    MW: 39169.6 Da    PI: 9.7188
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_48074genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP138.71.7e-4376152177
                    --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
            SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                    +CqvegC++dls ak y++rhkvC +hsk+p+v+v+g+eqrfCqqCsrfh lsefD++krsCrrrLa+hnerrrk+ 
  C.cajan_48074  76 RCQVEGCKVDLSGAKAYYSRHKVCGMHSKSPTVIVAGIEQRFCQQCSRFHLLSEFDQGKRSCRRRLAGHNERRRKPP 152
                    6**************************************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.7E-3671138IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.42874151IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.57E-4175156IPR004333Transcription factor, SBP-box
PfamPF031103.0E-3377150IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MSSGSVTKAS LSSSSSPNSS TESLDGLKFG QKIYFEDVSV AAATTAQGAK TSVGVSSSSS  60
SKKGRGGSML GAQPPRCQVE GCKVDLSGAK AYYSRHKVCG MHSKSPTVIV AGIEQRFCQQ  120
CSRFHLLSEF DQGKRSCRRR LAGHNERRRK PPPSSLLTSR YGRISSPIFD NNARPGGFLM  180
EFASYPKLTL RNSFSTPRST EQVPGNHAAA LTWQTSSDTP SEFFLQGSGS GGGTSFLGPK  240
HPLVESYTGV TDSNCALSLL SSQTWGSRNT NTSAELNNTL LNFNGTSSMA QFAVASSQVA  300
AIHQLPNATS WYSKTVGSPE AIPDLGLGQI SPPLSHLHGE LDVSQQGRRH YMDLGESRAC  360
QSSHWSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-31771501184squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_48074
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150417e-97AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020208244.10.0squamosa promoter-binding-like protein 9
TrEMBLA0A151QQK20.0A0A151QQK2_CAJCA; Squamosa promoter-binding-like protein 9
STRINGGLYMA18G36960.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42083359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.17e-54squamosa promoter binding protein-like 9