PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_48022
Common NameKK1_048267
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family TALE
Protein Properties Length: 375aa    MW: 42668.5 Da    PI: 6.3426
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_48022genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.78.4e-083213542154
                    HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    k +yp++e++++L +++gL+ +q+ +WF N+R +
  C.cajan_48022 321 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 354
                    469*****************************87 PP
2ELK292.4e-10275296122
            ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                    ELKh+L+++Y+++++++++E++
  C.cajan_48022 275 ELKHELKQGYKEKIVDIREEIL 296
                    9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.4E-19110154IPR005540KNOX1
PfamPF037901.9E-17113153IPR005540KNOX1
SMARTSM012567.6E-28163218IPR005541KNOX2
PfamPF037913.1E-20167217IPR005541KNOX2
SMARTSM011886.1E-4275296IPR005539ELK domain
PROSITE profilePS512139.969275295IPR005539ELK domain
PfamPF037898.5E-7275296IPR005539ELK domain
PROSITE profilePS5007111.726295358IPR001356Homeobox domain
SMARTSM003894.7E-11297362IPR001356Homeobox domain
SuperFamilySSF466894.11E-16297361IPR009057Homeodomain-like
CDDcd000869.01E-12298359No hitNo description
Gene3DG3DSA:1.10.10.603.7E-25302359IPR009057Homeodomain-like
PfamPF059201.0E-17315354IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MAYHNPQDLP LHHFTEQDTS LLSDPNSKPP SDPHHPAPNW LNNALLRTHY THNNNNNSDT  60
NVDASNNATN FLNLHSADSA QWLHRNQSEV IDDVSGAVEL KGEAVEWQNA RHKAEILAHP  120
LYEQLLSAHV ACLRIATPVD QLPRIDAQLA QSQNVVAKYS AFRQPIVGDD KELDHFLSHY  180
VLLLCSFKEQ LQQHVRVHAM EAVMACWEIE QSLQSLTGVS PGEGTGATMS DDEDDQVDSD  240
ANPFDGGLDG PDSMGFGPLV PTENERSLME RVRHELKHEL KQGYKEKIVD IREEILRKRR  300
AGKLPGDTTS VLKAWWQSHS KWPYPTEEDK ARLVQETGLQ LKQINNWFIN QRKRNWHSNP  360
STSTVLKSKR KRYPY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A5e-12298363873Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1351371RKRNWHSNPSTSTVLKSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_48022
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1280600.0EF128060.1 Medicago truncatula class II KNOX homeobox transcription factor (KNOX5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020208971.10.0homeobox protein knotted-1-like 3 isoform X2
SwissprotO041360.0KNAP3_MALDO; Homeobox protein knotted-1-like 3
TrEMBLA0A151QMA60.0A0A151QMA6_CAJCA; Homeobox protein knotted-1-like 3
STRINGXP_007136985.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-178KNOTTED1-like homeobox gene 3