PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_47362
Common NameKK1_047240
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C2H2
Protein Properties Length: 349aa    MW: 39331.8 Da    PI: 7.2773
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_47362genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001272294123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    + C +Cgk F  + + ++H +++
  C.cajan_47362 272 FMCRKCGKAFAVRGDWRTHEKNC 294
                    89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.1E-6188207IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.64188215IPR007087Zinc finger, C2H2
SMARTSM003550.58188210IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280190210IPR007087Zinc finger, C2H2
SuperFamilySSF576671.51E-6254292No hitNo description
Gene3DG3DSA:3.30.160.609.2E-6259292IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808272292IPR007087Zinc finger, C2H2
SMARTSM0035549272292IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0090502Biological ProcessRNA phosphodiester bond hydrolysis, endonucleolytic
GO:0003676Molecular Functionnucleic acid binding
GO:0004526Molecular Functionribonuclease P activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MADPYSNFFS PSFFHSRSSN PSPHHHHPYH NNFINQATTT TNINNNHNSF FHFHHFQTTI  60
TSSACSCSSS SPPSPPLRKA LPLLSLSPTN EEEDQDQFCT AMDVEEDCNR TLHFKEEEQE  120
EDSVTVALHI GLPNPSAAEI ASVLSSACST DKEQQQGGGG DGFLSNRLNK GQYWIPTPSQ  180
ILIGPTQFSC PVCCKTFNRY NNMQMHMWGH GSQYRKGPES LRGTQPTGML RLPCYCCSPG  240
CRNNIDHPRA KPLKDFRTLQ THYKRKHGIK PFMCRKCGKA FAVRGDWRTH EKNCGKLWYC  300
ICGSDFKHKR SLKDHIKAFG SGHATYGIDG FEEEEEPASE VEQDNDLAP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_47362
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0988930.0BT098893.1 Soybean clone JCVI-FLGm-23O4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020208526.10.0zinc finger protein WIP2
SwissprotQ9SVY11e-145ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A151QPB20.0A0A151QPB2_CAJCA; Protein TRANSPARENT TESTA 1
STRINGGLYMA10G12500.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-126C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]