PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_47328 | ||||||||
Common Name | KK1_050546 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | LSD | ||||||||
Protein Properties | Length: 61aa MW: 6803.03 Da PI: 8.0293 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 43.5 | 5.3e-14 | 5 | 29 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr++L YP+GA++V+Ca+C+t+ C.cajan_47328 5 CNGCRNILVYPLGASNVCCAICNTI 29 ***********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 5.1E-12 | 4 | 32 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 7.4E-12 | 5 | 29 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 61 aa Download sequence Send to blast |
MRSVCNGCRN ILVYPLGASN VCCAICNTIN SVPPPRMLSF KDFRYFLVTT CLECSFGFTL 60 D |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_47328 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020204593.1 | 3e-18 | protein LSD1 | ||||
TrEMBL | A0A151UDE2 | 2e-36 | A0A151UDE2_CAJCA; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 1e-12 | lsd one like 1 |