PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_47265
Common NameKK1_046773
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family ZF-HD
Protein Properties Length: 277aa    MW: 30259.4 Da    PI: 7.1423
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_47265genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.18.7e-3360116358
    ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                    +v+YkeClkNh aslGgha+DGCgEfmps+ ++  +++++kCaACgCHRnFHRre++
  C.cajan_47265  60 AVVYKECLKNHVASLGGHALDGCGEFMPSPAATaDDPTSIKCAACGCHRNFHRREPD 116
                    689**************************9999889******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257745.0E-2361117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.4E-2761115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.5463114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.0E-2963114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.27E-20126199IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-31129200IPR009057Homeodomain-like
TIGRFAMsTIGR015651.2E-27138195IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MEIIAPPPPP PNSKSPEPEP ETPTRIHQSA AHANPNPKPV SFSNGVLKRH HPPPQHHPVA  60
VVYKECLKNH VASLGGHALD GCGEFMPSPA ATADDPTSIK CAACGCHRNF HRREPDDPPI  120
SPATHHNTAA PAPPHHSRKR FRTKFTQEQK EKMHEFADKV GWKMQKHDDE MVMEFCNEVG  180
VDRGVLKVWM HNNKNTLGKK DNNNNVNGSA LVITNGLPVD NVSVTVRPVH VHDHHRDHEH  240
PEINGNGNDN LGSQDGNQYE NDSGTNGGGT NGSSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A6e-241371961675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_47265
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020208273.11e-154zinc-finger homeodomain protein 9
SwissprotQ9LXG01e-59ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A151QQE80.0A0A151QQE8_CAJCA; ZF-HD homeobox protein At4g24660 family
STRINGGLYMA13G05420.11e-119(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.11e-52zinc finger homeodomain 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]