PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_46657
Common NameKK1_044537
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family B3
Protein Properties Length: 879aa    MW: 97179.5 Da    PI: 7.1534
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_46657genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3612e-19313413199
                    EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                    f+kvl+ sd+++ grlvlpk +ae++   +++ e++ l+++d +g+ W++++++  +++s++yvl+ G     ++ +L++gD+v+F++++  +++l
  C.cajan_46657 313 FEKVLSASDAGRIGRLVLPKACAEAYfpHISQSEGVPLRMQDVKGNDWKFQFRFwpNNNSRMYVLE-GVTPCIQSMQLRAGDTVTFSRID-PGGKL 406
                    99**************************777778999***************9989999999***9.********************887.78888 PP

                    EEEEE-S CS
             B3  93 vvkvfrk 99 
                    v++++++
  C.cajan_46657 407 VMGFRKA 413
                    8887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.4E-30309420IPR015300DNA-binding pseudobarrel domain
CDDcd100171.43E-22311412No hitNo description
SuperFamilySSF1019369.03E-20311413IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.912313414IPR003340B3 DNA binding domain
PfamPF023623.0E-16313412IPR003340B3 DNA binding domain
SMARTSM010193.5E-21313414IPR003340B3 DNA binding domain
PROSITE profilePS5105013.823575625IPR011124Zinc finger, CW-type
PfamPF074961.7E-9580622IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 879 aa     Download sequence    Send to blast
MGSDICVVNG SCTHEWRKGW TLRSGGFAQL CCKCGSSQDN SVFCNKFHRQ QNGWRECNFC  60
NKPIHCGCVV SRSLFEYLDF GGIGCVSCVN TTQLSMMRNT ENPNGSVSSI KSNASDRHSA  120
HFDGRLFAGS VDEGKLMQFC KIVEASESSR WNHGQRDGII PREGDVGFSN VMKPSVQSLT  180
FATLENNRST WEIKNMHESN SQPSLSMYLG NASGSNSVPP SVGEALEGRL DGKTSPPFHQ  240
GQRSRPIFPK PLKSGLTISV ETDKGRISQS RVARPPADGR GKNQLLPRYW PRITDQELER  300
LAGDLKSTVV PLFEKVLSAS DAGRIGRLVL PKACAEAYFP HISQSEGVPL RMQDVKGNDW  360
KFQFRFWPNN NSRMYVLEGV TPCIQSMQLR AGDTVTFSRI DPGGKLVMGF RKASNSTDTQ  420
DASTSAPSNS TKGTSSSAGT ENLPSGSNHA DLLHSVTGNV EPHLDEHTEH LHLGTGTAGL  480
LKTENNEMTN NSLVQQQISV SEKKRTRNIG PKSKRLLIDN VDAMELKLTW EEAQDLLRPP  540
PSVKPSIVTI EDQIFEEYDE PPVFGKRTIF SACSSGGKEQ WAQCDDCSKW RKLPIDALLP  600
PKWTCSENVW DSIRCSCSAA EELSSRELEN LLKTNKDFKK RRVVESSKSI QEHEPSGLDA  660
LASAAVLGEN LVDTAESSAR ATTKHPRHRP GCSCIVCIQP PSGKGKHEQT CTCNVCTTVK  720
RRFKTLMLRK KKRQSEHEAD AAQKEQVLQK DESDTNGASR DDASLLEKAE VGESSGGQID  780
LNSHPNREDM MQVDVTGLDM STPLETTTTN HSVREFMNQN DLRSFDNEVQ GGQNSSLHTQ  840
SNGEGQRFFS DGRCFSSIVW NQERDEVYSQ SNQSQNNLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-672914202131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1719730KRRFKTLMLRKK
2719732KRRFKTLMLRKKKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL2/HSL1. {ECO:0000269|PubMed:15894743, ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_46657
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-118AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020207045.10.0B3 domain-containing transcription repressor VAL1
SwissprotQ8W4L50.0VAL1_ARATH; B3 domain-containing transcription repressor VAL1
TrEMBLA0A151QW160.0A0A151QW16_CAJCA; B3 domain-containing transcription repressor VAL1
STRINGGLYMA11G31234.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103233039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2
Publications ? help Back to Top
  1. Jia H,McCarty DR,Suzuki M
    Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression.
    Plant Physiol., 2013. 163(3): p. 1293-305
    [PMID:24043445]
  2. Schneider A, et al.
    Potential targets of VIVIPAROUS1/ABI3-LIKE1 (VAL1) repression in developing Arabidopsis thaliana embryos.
    Plant J., 2016. 85(2): p. 305-19
    [PMID:26678037]
  3. Chhun T, et al.
    HSI2 Repressor Recruits MED13 and HDA6 to Down-Regulate Seed Maturation Gene Expression Directly During Arabidopsis Early Seedling Growth.
    Plant Cell Physiol., 2016. 57(8): p. 1689-706
    [PMID:27335347]
  4. Qüesta JI,Song J,Geraldo N,An H,Dean C
    Arabidopsis transcriptional repressor VAL1 triggers Polycomb silencing at FLC during vernalization.
    Science, 2016. 353(6298): p. 485-8
    [PMID:27471304]
  5. Yuan W, et al.
    A cis cold memory element and a trans epigenome reader mediate Polycomb silencing of FLC by vernalization in Arabidopsis.
    Nat. Genet., 2016. 48(12): p. 1527-1534
    [PMID:27819666]
  6. Merini W, et al.
    The Arabidopsis Polycomb Repressive Complex 1 (PRC1) Components AtBMI1A, B, and C Impact Gene Networks throughout All Stages of Plant Development.
    Plant Physiol., 2017. 173(1): p. 627-641
    [PMID:27837089]
  7. Li C,Cui Y
    A DNA element that remembers winter.
    Nat. Genet., 2016. 48(12): p. 1451-1452
    [PMID:27898079]
  8. Chen N,Veerappan V,Abdelmageed H,Kang M,Allen RD
    HSI2/VAL1 Silences AGL15 to Regulate the Developmental Transition from Seed Maturation to Vegetative Growth in Arabidopsis.
    Plant Cell, 2018. 30(3): p. 600-619
    [PMID:29475938]
  9. Sasnauskas G,Kauneckaite K,Siksnys V
    Structural basis of DNA target recognition by the B3 domain of Arabidopsis epigenome reader VAL1.
    Nucleic Acids Res., 2018. 46(8): p. 4316-4324
    [PMID:29660015]
  10. Wu B, et al.
    Structural insight into the role of VAL1 B3 domain for targeting to FLC locus in Arabidopsis thaliana.
    Biochem. Biophys. Res. Commun., 2018. 501(2): p. 415-422
    [PMID:29733847]