PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_46090

Common Name

KK1_046561

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

C2H2

Protein Properties

Length: 417aa MW: 45639.4 Da PI: 9.4689

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_46090	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2.1e-05	68	90	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H C.cajan_46090 68 FVCEICHKGFQRDQNLQLHRRGH 90 89*******************88 PP
2	zf-C2H2	12.5	0.00045	144	166	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ C.cajan_46090 144 WKCEKCSKIYAVQSDWKAHSKTC 166 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.13E-6	67	90	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.0E-5	67	90	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.046	68	90	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.637	68	90	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	70	90	IPR007087	Zinc finger, C2H2
SMART	SM00355	170	109	139	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.9E-4	132	165	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	7.13E-6	139	164	No hit	No description
SMART	SM00355	170	144	164	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MFPTAISNST SLSEDASVSS GTKLHDLGGL NQQQPQKIKK KRSLPGNPDP DAEVIALSPK 60 TLLATNRFVC EICHKGFQRD QNLQLHRRGH NLPWKLKQRS SKEVKKKAYV CPEPSCVHHN 120 PSRALGDLTG IKKHYCRKHG EKKWKCEKCS KIYAVQSDWK AHSKTCGTRE YRCDCGTLFS 180 RKDSFITHRA FCDALAEESA RISANQLAAT ANTTNPFQSL YVFQNQQLST FKQWDSSEEN 240 PNPSNIGSGI HVKPEYQTFH NPNPSAFGKL HVATQAPSSI NAATSAYMSA TALLQKAATV 300 GAAGITGPGS VGPQRVMGHV THLGEFETLS QLDPVVPDYM MRGFPTGSLR SDRLTRDFLG 360 LANGGAADVS TNVNDMLAFA GGAEYHQAHR HVLLKPQQGS AFGFLGTTTA PETWGNY

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MFPTAISNST SLSEDASVSS GTKLHDLGGL NQQQPQKIKK KRSLPGNPDP DAEVIALSPK  60
TLLATNRFVC EICHKGFQRD QNLQLHRRGH NLPWKLKQRS SKEVKKKAYV CPEPSCVHHN  120
PSRALGDLTG IKKHYCRKHG EKKWKCEKCS KIYAVQSDWK AHSKTCGTRE YRCDCGTLFS  180
RKDSFITHRA FCDALAEESA RISANQLAAT ANTTNPFQSL YVFQNQQLST FKQWDSSEEN  240
PNPSNIGSGI HVKPEYQTFH NPNPSAFGKL HVATQAPSSI NAATSAYMSA TALLQKAATV  300
GAAGITGPGS VGPQRVMGHV THLGEFETLS QLDPVVPDYM MRGFPTGSLR SDRLTRDFLG  360
LANGGAADVS TNVNDMLAFA GGAEYHQAHR HVLLKPQQGS AFGFLGTTTA PETWGNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-36	140	204	3	67	Zinc finger protein JACKDAW
5b3h_F	2e-36	140	204	3	67	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_46090

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	1e-174	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020208185.1	0.0	protein indeterminate-domain 12
Swissprot	O22759	1e-125	IDD12_ARATH; Protein indeterminate-domain 12
TrEMBL	A0A151QQW2	0.0	A0A151QQW2_CAJCA; Zinc finger protein MAGPIE
STRING	XP_007162467.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-126	indeterminate(ID)-domain 12

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]