PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_46029
Common NameKK1_044018
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family GRAS
Protein Properties Length: 434aa    MW: 48712.7 Da    PI: 6.6273
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_46029genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS418.65.3e-128644331373
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    l++lL+ cA+a+s+++++  ++l+++ +  +s +g+p+qRl ay++e+L ar   s++++y+al+++e +    ++ l+++++++e++P+lkf+++
  C.cajan_46029  64 LKQLLIVCAKALSENNMKDFDHLIEKARSVVSISGEPIQRLGAYLVEGLVARKEASGNNIYHALRCREPE---GKDLLSYMQILYEICPYLKFGYM 156
                    679******************************************************************9...9********************** PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                    +aN aI ea  +e+r+HiiDf+i+qG+QW++LlqaLa+Rp+gpp++RiTg+++p s+  + + le++++ La + +++++p+ef+  v     d++
  C.cajan_46029 157 AANGAIAEACRNEDRIHIIDFQIGQGIQWMTLLQALAARPGGPPHMRITGIDDPFSKyvRGDGLEAVEKSLAAISQRFNIPVEFHG-VPVLAPDVT 251
                    *****************************************************998899***************************.67788999* PP

           GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                     ++L+v+pgEalaVn+ lqlh++ desv+++++rd +L+lvkslsPkv ++veqe+++n+++F+ rf+e+l+yy a+f+s++++lpr+s+eri+vE
  C.cajan_46029 252 KDMLDVRPGEALAVNFPLQLHHTADESVDMSNPRDGLLRLVKSLSPKVTTLVEQESNTNTTPFFIRFIETLDYYLAIFESIDVSLPRKSKERINVE 347
                    ************************************************************************************************ PP

           GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                    +++l+r+ivn++aceg+er+erhe l+kW++rl++aGF ++pls+++++ +++ll+ ++ + y + e++g+++lgWk+r+L+s+SaW
  C.cajan_46029 348 QHCLARDIVNIIACEGKERVERHELLGKWKSRLTMAGFCQYPLSSYVNSVIRSLLKCYS-EHYDLVEKDGAMLLGWKERKLISASAW 433
                    *******************************************************9998.66************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.84538415IPR005202Transcription factor GRAS
PfamPF035141.8E-12564433IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MAPDGEDQFT TPSASFGVTS RPTTSGQRNR SWSHEGQSSD DAHIEKRHKS MEEVSLQGLP  60
SINLKQLLIV CAKALSENNM KDFDHLIEKA RSVVSISGEP IQRLGAYLVE GLVARKEASG  120
NNIYHALRCR EPEGKDLLSY MQILYEICPY LKFGYMAANG AIAEACRNED RIHIIDFQIG  180
QGIQWMTLLQ ALAARPGGPP HMRITGIDDP FSKYVRGDGL EAVEKSLAAI SQRFNIPVEF  240
HGVPVLAPDV TKDMLDVRPG EALAVNFPLQ LHHTADESVD MSNPRDGLLR LVKSLSPKVT  300
TLVEQESNTN TTPFFIRFIE TLDYYLAIFE SIDVSLPRKS KERINVEQHC LARDIVNIIA  360
CEGKERVERH ELLGKWKSRL TMAGFCQYPL SSYVNSVIRS LLKCYSEHYD LVEKDGAMLL  420
GWKERKLISA SAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-617143326378Protein SCARECROW
5b3h_A5e-617143325377Protein SCARECROW
5b3h_D5e-617143325377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_46029
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020206637.10.0scarecrow-like protein 21 isoform X1
RefseqXP_020206640.10.0scarecrow-like protein 21 isoform X2
RefseqXP_029125788.10.0scarecrow-like protein 21 isoform X2
RefseqXP_029125789.10.0scarecrow-like protein 21 isoform X2
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A151QX830.0A0A151QX83_CAJCA; Chitin-inducible gibberellin-responsive protein 1
STRINGGLYMA06G41500.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-176GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]