PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | C.cajan_45207 | ||||||||
Common Name | KK1_047616 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
|
||||||||
Family | GRF | ||||||||
Protein Properties | Length: 533aa MW: 57228.7 Da PI: 7.959 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 72.1 | 6.5e-23 | 148 | 189 | 1 | 42 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrks 42 d+epgrCrRtDGKkWRCsr+v +++k+CErH+hrgr r+ +s C.cajan_45207 148 DPEPGRCRRTDGKKWRCSRDVAPNHKYCERHMHRGRPRRPRS 189 79************************************9887 PP | |||||||
2 | QLQ | 50.9 | 4.6e-18 | 92 | 125 | 2 | 35 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 +FT aQ+ +L++Q+++yKy++a++PvPp Ll i C.cajan_45207 92 PFTTAQWRELERQAMIYKYMMASVPVPPGLLNLI 125 8***************************999766 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.1E-10 | 91 | 127 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.42 | 92 | 127 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 7.6E-13 | 92 | 125 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.98 | 148 | 195 | IPR014977 | WRC domain |
Pfam | PF08879 | 4.6E-18 | 149 | 189 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010114 | Biological Process | response to red light | ||||
GO:0010218 | Biological Process | response to far red light | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 533 aa Download sequence Send to blast |
MTMMAHHNHH HRPLSSSPFD NVPCAAADAD ADADGPTAYM SFTNHINLVS ALAPPAPAPA 60 TPLQPFDISP YTSPTTTFKP SAGGMAASLG FPFTTAQWRE LERQAMIYKY MMASVPVPPG 120 LLNLIPTSTS RSPCMDGAFN LRLASSSDPE PGRCRRTDGK KWRCSRDVAP NHKYCERHMH 180 RGRPRRPRSR KPVEVHTNTP TPTSINNNNN NEQIKRARHE SIPSPTPDVA VAVSNPTSRK 240 DGSSPHFLAS STTTQPYLES SLSLANFGVK SANFDSVAPL SSNNKEPRGL DWMLNGDPIS 300 LGASDSEWQS LIHNKVGMTS ESSCNTTEPQ YLNSFALYSS GMDQHNRRHP LFLNPLVVPM 360 ENLQQEKPRG FIDAWSNSET GEGNANINKN SAASIGKLSL SSLDLSMGGG AVHEDIGTIE 420 MGLGNKHTDT KSSLSNWLNP APWVASTPGG PLAEVLRSST VTATNEAAST TSSQATTHVE 480 SNSPLGTMVS SPSGVLQKTL ASLSDSSSNS SPRVASSRAN SEMALLRFQS SVN |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | C.cajan_45207 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_029126230.1 | 0.0 | LOW QUALITY PROTEIN: growth-regulating factor 2 | ||||
TrEMBL | A0A151UIM6 | 0.0 | A0A151UIM6_CAJCA; Uncharacterized protein | ||||
STRING | XP_007136458.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7324 | 28 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G53660.1 | 8e-28 | growth-regulating factor 7 |