PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_45151 | ||||||||
Common Name | KK1_041995 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | TCP | ||||||||
Protein Properties | Length: 350aa MW: 38721.2 Da PI: 8.8966 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 101.1 | 1.9e-31 | 53 | 182 | 3 | 107 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsssg... 88 g kdrhsk++T +g+RdRRvRls+++a+ ++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ ++ +++ ++++ s + C.cajan_45151 53 GNKDRHSKVCTIRGLRDRRVRLSVPTAIHLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPIPPGNFTlgypslvA-----CNNDQFSTSreg 143 579************************************************************8888866665432221.....222211111121 PP TCP 89 ...........................kaaksaakskksqksaasa 107 + s++++++++s+ C.cajan_45151 144 sgqntlwkpkskevsgemvsgkanwmnR-------SEDDDNDKSSN 182 2223343333333333333322222221.......11111111111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.2E-29 | 53 | 189 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 30.408 | 54 | 112 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0009507 | Cellular Component | chloroplast |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MINSTKEAEF PLKQEGLSSS DHHEKEKATS SSSSQWLKLK DPRIVRVSRA FGGNKDRHSK 60 VCTIRGLRDR RVRLSVPTAI HLYDLQDRLG LNQPSKVVDW LLNAAKHEID ELPPLPIPPG 120 NFTLGYPSLV ACNNDQFSTS REGSGQNTLW KPKSKEVSGE MVSGKANWMN RSEDDDNDKS 180 SNNNDDKQSN SCHGAHVLPN SLLPRANHPS FLGLMNTMPS LGYQWDPNSG DVAQWANHGF 240 VNQADIHSIN VVPFPSNLAL STGNTTTPQI LVCPPGATQP YFPSHHVASM EMNQRQLNHY 300 QMLSSSSQNF LANSLNPSQV ISQQGKVPFS LGKPKLLHSP NSSESHSRKH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 5e-18 | 59 | 113 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 5e-18 | 59 | 113 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00326 | DAP | Transfer from AT3G02150 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_45151 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020205265.1 | 0.0 | transcription factor TCP13 isoform X2 | ||||
Refseq | XP_020205266.1 | 0.0 | transcription factor TCP13 isoform X2 | ||||
Refseq | XP_020205268.1 | 0.0 | transcription factor TCP13 isoform X2 | ||||
Refseq | XP_020205269.1 | 0.0 | transcription factor TCP13 isoform X2 | ||||
Refseq | XP_020205270.1 | 0.0 | transcription factor TCP13 isoform X2 | ||||
Refseq | XP_020205272.1 | 0.0 | transcription factor TCP13 isoform X2 | ||||
Refseq | XP_029125515.1 | 0.0 | transcription factor TCP13 isoform X1 | ||||
Refseq | XP_029125516.1 | 0.0 | transcription factor TCP13 isoform X2 | ||||
TrEMBL | A0A151R2M5 | 0.0 | A0A151R2M5_CAJCA; Transcription factor TCP13 | ||||
STRING | XP_007151337.1 | 1e-179 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF932 | 34 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 2e-37 | plastid transcription factor 1 |