PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_44106

Common Name

KK1_043884

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

SBP

Protein Properties

Length: 321aa MW: 35093.9 Da PI: 8.7802

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_44106	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.1	1.6e-40	155	232	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++ l +ak+yhrrhkvCe+hskap v+v g+eqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk+++ C.cajan_44106 155 RCQVEGCHVALLNAKDYHRRHKVCEMHSKAPRVVVLGMEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSH 232 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.7E-34	150	217	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.351	153	230	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.31E-38	154	235	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	8.0E-32	156	229	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MFCLGNRDLN NGNAFAWDSW EATTNDNNNN TNNNNNGSRL LNAFHGEGSA AGLANALMFL 60 PQNGGVLRQR QHAYGGEGSS HSHSHSHSHV HSDPHLTCLK LGKRHYFEDA NASGGGSGGV 120 APGLALGDKR GKGCSAGAAA AKAVGFTAAA ATVPRCQVEG CHVALLNAKD YHRRHKVCEM 180 HSKAPRVVVL GMEQRFCQQC SRFHVVSEFD DSKRSCRRRL AGHNERRRKS SHDSVARNSS 240 QGGCALSLLS SRSDSWLSPS DLSTRCSAAL RELIAENRAA IMARQFVSDR DWHFHHHAAE 300 EFKEIQPESN YLPQQMFPQT Q

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-29	156	229	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_44106

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	3e-71	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020206538.1	0.0	squamosa promoter-binding-like protein 7
Swissprot	Q01JD1	1e-57	SPL7_ORYSI; Squamosa promoter-binding-like protein 7
Swissprot	Q7XT42	1e-57	SPL7_ORYSJ; Squamosa promoter-binding-like protein 7
TrEMBL	A0A151QXQ8	0.0	A0A151QXQ8_CAJCA; Squamosa promoter-binding-like protein 7
STRING	GLYMA01G15134.1	1e-153	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9613	27	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33810.1	4e-35	squamosa promoter binding protein-like 3

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]